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Publications

2025

Understanding Squeeze-and-Excitation Layers for Medical Image Segmentation

Authors
Martins, ML; Coimbra, MT; Renna, F;

Publication
EUSIPCO

Abstract

2025

Radiogenomic Insights from a Portuguese Lung Cancer Cohort: Foundations for Predictive Modeling

Authors
Neves, I; Freitas, C; Lemos, C; Oliveira, HP; Hespanhol, V; França, M; Pereira, T;

Publication
Measurement and Evaluations in Cancer Care

Abstract

2025

Dynamic Data Radio Bearer Management for O-RAN Slicing in 5G Standalone Networks

Authors
Silva, P; Dinis, R; Coelho, A; Ricardo, M;

Publication
Lecture Notes of the Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering, LNICST

Abstract
The rapid growth of data traffic and evolving service demands are driving a shift from traditional network architectures to advanced solutions. While 5G networks provide reduced latency and higher availability, they still face limitations due to reliance on integrated hardware, leading to configuration and interoperability challenges. The emerging Open Radio Access Network (O-RAN) paradigm addresses these issues by enabling remote configuration and management of virtualized components through open interfaces, promoting cost-effective, multi-vendor interoperability. Network slicing, a key 5G enabler, allows for tailored network configurations to meet heterogeneous performance requirements. The main contribution of this paper is a private Standalone 5G network based on O-RAN, featuring a dynamic Data Radio Bearer Management xApp (xDRBM) for real-time metric collection and traffic prioritization. xDRBM optimizes resource usage and ensures performance guarantees for specific applications. Validation was conducted in an emulated environment representative of real-world scenarios. © ICST Institute for Computer Sciences, Social Informatics and Telecommunications Engineering 2025.

2025

Unveiling the Expanding Landscape of Attention-Capture Damaging Patterns

Authors
Tales Gomes; António Correia; Jano de Souza; Daniel Schneider;

Publication
Proceedings of the 27th International Conference on Enterprise Information Systems

Abstract

2025

A two-step concept-based approach for enhanced interpretability and trust in skin lesion diagnosis

Authors
Patrício, C; Teixeira, LF; Neves, JC;

Publication
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL

Abstract
The main challenges hindering the adoption of deep learning-based systems in clinical settings are the scarcity of annotated data and the lack of interpretability and trust in these systems. Concept Bottleneck Models (CBMs) offer inherent interpretability by constraining the final disease prediction on a set of human-understandable concepts. However, this inherent interpretability comes at the cost of greater annotation burden. Additionally, adding new concepts requires retraining the entire system. In this work, we introduce a novel two-step methodology that addresses both of these challenges. By simulating the two stages of a CBM, we utilize a pretrained Vision Language Model (VLM) to automatically predict clinical concepts, and an off-the-shelf Large Language Model (LLM) to generate disease diagnoses grounded on the predicted concepts. Furthermore, our approach supports test-time human intervention, enabling corrections to predicted concepts, which improves final diagnoses and enhances transparency in decision-making. We validate our approach on three skin lesion datasets, demonstrating that it outperforms traditional CBMs and state-of-the-art explainable methods, all without requiring any training and utilizing only a few annotated examples. The code is available at https://github.com/CristianoPatricio/2step-concept-based-skin-diagnosis.

2025

Contrastive Coronary Artery Calcification Image Retrieval in Computed Tomography

Authors
Castro R.; Santos R.; Filipe V.M.; Renna F.; Paredes H.; Pedrosa J.;

Publication
Annual International Conference of the IEEE Engineering in Medicine and Biology Society IEEE Engineering in Medicine and Biology Society Annual International Conference

Abstract
Cardiovascular diseases are one of the main causes of death in the world. The predominant form of cardiovascular disease is coronary artery disease. Coronary artery calcium scanning is a non-contrast computed tomography exam that is considered the most reliable predictor of coronary events. Deep learning models have been developed for the segmentation of coronary artery calcium but the results have limited interpretability due to the black-box nature of these models. This work proposes an image retrieval pipeline based on a supervised contrastive framework that is capable of enhancing this interpretability by providing similar visual examples of coronary calcifications. In the COCA dataset, it is shown that this retrieval presents a label precision of 0.944 ± 0.230 regarding artery labels of retrieved images, with moderate similarity in terms of calcification area and Agatston score. It is also shown that the retrieval can be used to correct a deep CAC segmentation model by passing predictions from a segmentation model through the retrieval system, improving robustness and explainability.Clinical relevance- This study enhances CAC segmentation through image retrieval, improving both explainability and artery-specific labeling. By providing clinicians with more interpretable and anatomically accurate results, our approach aims to increase confidence in AI-assisted diagnostics leading to better-informed clinical decision-making in coronary artery disease diagnosis.

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