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Publications

2009

On the Cost of Database Clusters Reconfiguration

Authors
Vilaca, R; Pereira, J; Oliveira, R; Armendariz Inigo, JE; Gonzalez de Mendivi, JRG;

Publication
2009 28TH IEEE INTERNATIONAL SYMPOSIUM ON RELIABLE DISTRIBUTED SYSTEMS, PROCEEDINGS

Abstract
Data base clusters based on share-nothing replication techniques are currently widely accepted as a practical solution to scalability and availability of the data tier. A key issue when planning such systems is the ability to meet service level agreements when load spikes occur or cluster nodes fail. This translates into the ability to provision and deploy additional nodes. Many current research efforts focus on designing autonomic controllers to perform such reconfiguration, tuned to quickly react to system changes and spawn new replicas based on resource usage and performance measurements. In contrast, we are concerned about the inherent impact of deploying an additional node to an online cluster, considering both the time required to finish such an action as well as the impact on resource usage and performance of the cluster as a whole. If noticeable, such impact hinders the practicability of self-management techniques, since it adds an additional dimension that has to he accounted for. Our approach is to systematically benchmark a number of different reconfiguration scenarios to assess the cost of bringing a new replica online. We consider factors such as: workload characteristics, incremental and parallel recovery, flow control and outdatedness of the recovering replica. As a result, we show that research should be refocused from optimizing the capture and transmition of changes to applying them, which in a realistic setting dominates the cost of the recovery operation.

2009

Fine-tune artificial neural networks automatically

Authors
Reinaldo, F; Camacho, R; Reis, LP; Magalhaes, DR;

Publication
Lecture Notes in Electrical Engineering

Abstract
To get the most out of powerful tools, expert knowledge is often required. Experts are the ones with the suitable knowledge to tune the tools' parameters. In this paper we assess several techniques which can automatically fine-tune ANN parameters. Those techniques include the use of GA and stratified sampling. The fine-tuning includes the choice of the best ANN structure and the best network biases and their weights. Empirical results achieved in experiments performed using nine heterogeneous data sets show that the use of the proposed Stratified Sampling technique is advantageous. © 2009 Springer Science+Business Media, LLC.

2009

BIORED - A Genetic Algorithm for Pattern Detection in Biosequences

Authors
Pereira, P; Silva, F; Fonseca, NA;

Publication
2ND INTERNATIONAL WORKSHOP ON PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (IWPACBB 2008)

Abstract
We present a new, efficient and scalable tool, named BIORED, for pattern discovery in proteomic and genomic sequences. It uses a genetic algorithm to find interesting patterns in the form of regular expressions, and a new efficient pattern matching procedure to count pattern occurrences. We studied the performance, scalability and usefulness of BIORED using several databases of biosequences. The results show that BIORED was successful in finding previously known patterns, thus an excellent indicator for its potential. BIORED is available for download under the GNU Public License at http://www.dcc.fc.up.pt/bi-ored/. An online demo is available at the same address.

2009

Improving the efficiency of inductive logic programming systems

Authors
Fonseca, NA; Costa, VS; Rocha, R; Camacho, R; Silva, F;

Publication
SOFTWARE-PRACTICE & EXPERIENCE

Abstract
Inductive logic programming (ILP) is a sub-field of machine learning that provides an excellent framework for multi-relational data mining applications. The advantages of ILP have been successfully demonstrated in complex and relevant industrial and scientific problems. However, to produce valuable models, ILP systems often require long running times and large amounts of memory. In this paper we address fundamental issues that have direct impact on the efficiency of ILP systems. Namely, we discuss how improvements in the indexing mechanisms of an underlying logic programming system benefit ILP performance. Furthermore, we propose novel data structures to reduce memory requirements and we suggest a new lazy evaluation technique to search the hypothesis space more efficiently. These proposals have been implemented in the April ILP system and evaluated using several well-known data sets. The results observed show significant improvements in running time without compromising the accuracy of the models generated. Indeed, the combined techniques achieve several order of magnitudes speedup in some data sets. Moreover, memory requirements are reduced in nearly half of the data sets. Copyright (C) 2008 John Wiley & Sons, Ltd.

2009

Wikis4SE 2009

Authors
Aguiar, A; Flores, N; Merson, P;

Publication
Proceedings of the 5th International Symposium on Wikis and Open Collaboration - WikiSym '09

Abstract

2009

A New Efficient Mechanism for Establishing IP Connectivity between Ambient Networks

Authors
Campos, R; Ricardo, M;

Publication
2009 IEEE INTERNATIONAL CONFERENCE ON COMMUNICATIONS, VOLS 1-8

Abstract
The changes in the communication paradigm envisioned for future networks, with peer-to-peer/symmetric attachments gaining momentum and two IP (Internet Protocol) versions coexisting, will pose new challenges to mobile communication networks. Traditional IP auto-configuration mechanisms will not work properly, since they were designed mostly having in mind a client-server/asymmetric attachment model, they assume a single IP version paradigm, and they target the auto-configuration of devices only. The IST Ambient Networks project has introduced a new concept - the Ambient Network - that enables handling every communication entity, either a single device or an entire network, as an Ambient Network (AN). This paper describes a new efficient mechanism, named Basic Connectivity (BC) mechanism, for auto-configuring IP connectivity between attaching ANs. A proof-of-concept prototype, experimental results, and theoretical analysis show that BC suites the future networking paradigm and represents a solution more efficient than the current trial-and-error mechanism for auto-configuring IP connectivity.

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