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About

About

Prof. Miguel Coimbra is currently a Full Professor at the Computer Science Department of the Faculty of Sciences of the University of Porto. He is a member of the Executive Board of the Faculty of Sciences of the University of Porto since 2019, current coordinator of the TEC4Health line of INESC TEC, and past Chair of the Portugal Chapter of the IEEE Engineering and Medicine Society (2017-2021). He was one of the founders of IT Porto in 2007, its coordinator during 2015-19 and founder of the Interactive Media Group at this institute. He was the Director of the Master in Medical Informatics of the University of Porto between 2014-16, and was a co-founder in 2013 of IS4H - Interactive Systems for Healthcare, a spin-off company of the University of Porto. Prof. Coimbra leads and participates in various projects involving engineering and medicine, namely cardiology and gastroenterology, with current and past collaborations with hospitals in Portugal, Brazil (Pernambuco, Paraíba, Minas Gerais, São Paulo), Germany and Sweden. The nearly 16 years of experience in biomedical signal processing and interactive systems for healthcare have led to the development and deployment of systems for the collection and analysis of auscultation signals, echocardiography image processing for rheumatic fever screening, monitoring of stress and fatigue of firefighters in action, endoscopy signal analysis for cancer detection, computer assisted decision systems for capsule endoscopy, and quantification of 3d motion patterns for epilepsy, among others. Prof. Coimbra has more than 130 scientific publications, 25 of which in high-impact scientific journals (17 IEEE Transactions) and has attracted and managed more than 2M€ in research funding, over a total of 15 research projects acting as the PI of the project (10 projects) or co-PI of its Institution (5 projects).

Details

Details

  • Name

    Miguel Coimbra
  • Role

    TEC4 Coordinator
  • Since

    15th September 1998
  • Nationality

    Portugal
  • Contacts

    +351222094106
    miguel.coimbra@inesctec.pt
006
Publications

2024

Separation of the Aortic and Pulmonary Components of the Second Heart Sound via Alternating Optimization

Authors
Renna, F; Gaudio, A; Mattos, S; Plumbley, MD; Coimbra, MT;

Publication
IEEE ACCESS

Abstract
An algorithm for blind source separation (BSS) of the second heart sound (S2) into aortic and pulmonary components is proposed. It recovers aortic (A2) and pulmonary (P2) waveforms, as well as their relative delays, by solving an alternating optimization problem on the set of S2 sounds, without the use of auxiliary ECG or respiration phase measurement data. This unsupervised and data-driven approach assumes that the A2 and P2 components maintain the same waveform across heartbeats and that the relative delay between onset of the components varies according to respiration phase. The proposed approach is applied to synthetic heart sounds and to real-world heart sounds from 43 patients. It improves over two state-of-the-art BSS approaches by 10% normalized root mean-squared error in the reconstruction of aortic and pulmonary components using synthetic heart sounds, demonstrates robustness to noise, and recovery of splitting delays. The detection of pulmonary hypertension (PH) in a Brazilian population is demonstrated by training a classifier on three scalar features from the recovered A2 and P2 waveforms, and this yields an auROC of 0.76.

2023

Beyond Heart Murmur Detection: Automatic Murmur Grading From Phonocardiogram

Authors
Elola, A; Aramendi, E; Oliveira, J; Renna, F; Coimbra, MT; Reyna, MA; Sameni, R; Clifford, GD; Rad, AB;

Publication
IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS

Abstract
Objective: Murmurs are abnormal heart sounds, identified by experts through cardiac auscultation. The murmur grade, a quantitative measure of the murmur intensity, is strongly correlated with the patient's clinical condition. This work aims to estimate each patient's murmur grade (i.e., absent, soft, loud) from multiple auscultation location phonocardiograms (PCGs) of a large population of pediatric patients from a low-resource rural area. Methods: The Mel spectrogram representation of each PCG recording is given to an ensemble of 15 convolutional residual neural networks with channel-wise attention mechanisms to classify each PCG recording. The final murmur grade for each patient is derived based on the proposed decision rule and considering all estimated labels for available recordings. The proposed method is cross-validated on a dataset consisting of 3456 PCG recordings from 1007 patients using a stratified ten-fold cross-validation. Additionally, the method was tested on a hidden test set comprised of 1538 PCG recordings from 442 patients. Results: The overall cross-validation performances for patient-level murmur gradings are 86.3% and 81.6% in terms of the unweighted average of sensitivities and F1-scores, respectively. The sensitivities (and F1-scores) for absent, soft, and loud murmurs are 90.7% (93.6%), 75.8% (66.8%), and 92.3% (84.2%), respectively. On the test set, the algorithm achieves an unweighted average of sensitivities of 80.4% and an F1-score of 75.8%. Conclusions: This study provides a potential approach for algorithmic pre-screening in low-resource settings with relatively high expert screening costs. Significance: The proposed method represents a significant step beyond detection of murmurs, providing characterization of intensity, which may provide an enhanced classification of clinical outcomes.

2023

The selection of an optimal segmentation region in physiological signals

Authors
Oliveira, J; Carvalho, M; Nogueira, D; Coimbra, M;

Publication
INTERNATIONAL TRANSACTIONS IN OPERATIONAL RESEARCH

Abstract
Physiological signals are often corrupted by noisy sources. Usually, artificial intelligence algorithms analyze the whole signal, regardless of its varying quality. Instead, experienced cardiologists search for a high-quality signal segment, where more accurate conclusions can be draw. We propose a methodology that simultaneously selects the optimal processing region of a physiological signal and determines its decoding into a state sequence of physiologically meaningful events. Our approach comprises two phases. First, the training of a neural network that then enables the estimation of the state probability distribution of a signal sample. Second, the use of the neural network output within an integer program. The latter models the problem of finding a time window by maximizing a likelihood function defined by the user. Our method was tested and validated in two types of signals, the phonocardiogram and the electrocardiogram. In phonocardiogram and electrocardiogram segmentation tasks, the system's sensitivity increased on average from 95.1% to 97.5% and from 78.9% to 83.8%, respectively, when compared to standard approaches found in the literature.

2023

Colonoscopic Polyp Detection with Deep Learning Assist

Authors
Neto, A; Couto, D; Coimbra, MT; Cunha, A;

Publication
Proceedings of the 18th International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications, VISIGRAPP 2023, Volume 4: VISAPP, Lisbon, Portugal, February 19-21, 2023.

Abstract
Colorectal cancer is the third most common cancer and the second cause of cancer-related deaths in the world. Colonoscopic surveillance is extremely important to find cancer precursors such as adenomas or serrated polyps. Identifying small or flat polyps can be challenging during colonoscopy and highly dependent on the colonoscopist's skills. Deep learning algorithms can enable improvement of polyp detection rate and consequently assist to reduce physician subjectiveness and operation errors. This study aims to compare YOLO object detection architecture with self-attention models. In this study, the Kvasir-SEG polyp dataset, composed of 1000 colonoscopy annotated still images, were used to train (700 images) and validate (300images) the performance of polyp detection algorithms. Well-defined architectures such as YOLOv4 and different YOLOv5 models were compared with more recent algorithms that rely on self-attention mechanisms, namely the DETR model, to understand which technique can be more helpful and reliable in clinical practice. In the end, the YOLOv5 proved to be the model achieving better results for polyp detection with 0.81 mAP, however, the DETR had 0.80 mAP proving to have the potential of reaching similar performances when compared to more well-established architectures. © 2023 by SCITEPRESS - Science and Technology Publications, Lda.

2023

Assisted probe guidance in cardiac ultrasound: A review

Authors
Ferraz, S; Coimbra, M; Pedrosa, J;

Publication
FRONTIERS IN CARDIOVASCULAR MEDICINE

Abstract
Echocardiography is the most frequently used imaging modality in cardiology. However, its acquisition is affected by inter-observer variability and largely dependent on the operator's experience. In this context, artificial intelligence techniques could reduce these variabilities and provide a user independent system. In recent years, machine learning (ML) algorithms have been used in echocardiography to automate echocardiographic acquisition. This review focuses on the state-of-the-art studies that use ML to automate tasks regarding the acquisition of echocardiograms, including quality assessment (QA), recognition of cardiac views and assisted probe guidance during the scanning process. The results indicate that performance of automated acquisition was overall good, but most studies lack variability in their datasets. From our comprehensive review, we believe automated acquisition has the potential not only to improve accuracy of diagnosis, but also help novice operators build expertise and facilitate point of care healthcare in medically underserved areas.

Supervised
thesis

2023

Collaborative Tools for Lung Cancer Diagnosis in Computed Tomography

Author
Carlos Alexandre Nunes Ferreira

Institution
UP-FCUP

2023

Heart Sound Analysis for Cardiovascular Diseases Identification

Author
Diogo Marcelo Esterlita Nogueira

Institution
UP-FCUP

2023

Deep Learning Algorithms for Anatomical Landmark Detection

Author
Miguel Lopes Martins

Institution
UP-FCUP

2023

Echocardiography Automatic Image Quality Enhancement Using Generative Adversarial Networks

Author
Teresa Isabel da Silva Corado

Institution
UP-FCUP

2023

Multimodal deep learning for heart sound and electrocardiogram classification

Author
Hélder Miguel Carvalho Vieira

Institution
UP-FCUP