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Sobre

Sobre

Miguel Coimbra, licenciado em Engenharia Eletrotécnica e de Computadores (Faculdade de Engenharia da Universidade do Porto) e doutorado em Engenharia Electrónica (Queen Mary, University of London), é Professor Catedrático no Departamento de Ciência de Computadores da Faculdade de Ciências da Universidade do Porto. É vogal do Conselho Executivo da Faculdade de Ciências da Universidade do Porto desde abril de 2019, coordenador da linha TEC4Health do INESC TEC desde janeiro de 2019, e coordenador do laboratório BioImaging Lab do INESC TEC desde janeiro de 2022. Foi presidente do Portugal Chapter da IEEE Engineering in Medicine and Biology Society entre 2018 e 2022. Foi um dos fundadores em 2007 da Delegação do Porto do Instituto de Telecomunicações, da qual foi coordenador entre 2015 e 2019. Nesta criou e coordenou entre 2008 e 2014 o grupo de Interactive Multimedia. Foi diretor entre 2014 e 2016 do Mestrado em Informática Médica da Universidade do Porto, e co-fundador em 2013 da IS4H – Interactive Systems for Healthcare, uma empresa spin-off da Universidade do Porto, onde licencia e vende produtos baseados nas tecnologias interativas de auscultação desenvolvidas pela sua equipa.

A nível de atividade científica liderou ou participou em múltiplos projetos na interface entre a ciência de computadores e a saúde, nomeadamente em cardiologia, gastroenterologia e reumatologia, com colaborações atuais e passadas com instituições de saúde em Portugal, Brasil (Pernambuco, Paraíba, Minas Gerais, São Paulo), Alemanha e Suécia. Os quase 15 anos de experiência em ciência de computadores, mais concretamente na área da informática para a saúde (visão computacional, processamento de sinal biomédico, interação pessoa-máquina), levaram ao desenvolvimento e instalação de sistemas para a colheita e análise de sinais de auscultação, processamento de imagens de ecocardiografia para rastreio de febre reumática, monitorização de stress e fadiga de bombeiros em ação, análise de imagem endoscópica para deteção de cancro, sistemas de apoio à decisão para cápsula endoscópica, e quantificação de padrões de movimento 3D para epilepsia, entre outros. É (co)-autor de um total de 133 publicações científicas, incluindo 3 capítulos em livros e 29 artigos em revista, sendo 25 destes em revistas de primeiro quartil, 17 dos quais nas prestigiadas IEEE Transactions. A nível de formação avançada já terminou com sucesso a orientação de 4 investigadores de pós-doutoramento, 6 estudantes de doutoramento e 47 estudantes de mestrado. Durante os últimos 13 anos atraiu e geriu mais de 2M€ de financiamento para investigação, distribuídos por um total de 16 projetos nacionais ou internacionais onde atuou como investigador principal do projeto ou como líder da equipa de investigação da sua instituição.


Detalhes

Detalhes

  • Nome

    Miguel Coimbra
  • Cargo

    Coordenador de TEC4
  • Desde

    15 setembro 1998
  • Nacionalidade

    Portugal
  • Contactos

    +351222094106
    miguel.coimbra@inesctec.pt
004
Publicações

2023

Beyond Heart Murmur Detection: Automatic Murmur Grading From Phonocardiogram

Autores
Elola, A; Aramendi, E; Oliveira, J; Renna, F; Coimbra, MT; Reyna, MA; Sameni, R; Clifford, GD; Rad, AB;

Publicação
IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS

Abstract
Objective: Murmurs are abnormal heart sounds, identified by experts through cardiac auscultation. The murmur grade, a quantitative measure of the murmur intensity, is strongly correlated with the patient's clinical condition. This work aims to estimate each patient's murmur grade (i.e., absent, soft, loud) from multiple auscultation location phonocardiograms (PCGs) of a large population of pediatric patients from a low-resource rural area. Methods: The Mel spectrogram representation of each PCG recording is given to an ensemble of 15 convolutional residual neural networks with channel-wise attention mechanisms to classify each PCG recording. The final murmur grade for each patient is derived based on the proposed decision rule and considering all estimated labels for available recordings. The proposed method is cross-validated on a dataset consisting of 3456 PCG recordings from 1007 patients using a stratified ten-fold cross-validation. Additionally, the method was tested on a hidden test set comprised of 1538 PCG recordings from 442 patients. Results: The overall cross-validation performances for patient-level murmur gradings are 86.3% and 81.6% in terms of the unweighted average of sensitivities and F1-scores, respectively. The sensitivities (and F1-scores) for absent, soft, and loud murmurs are 90.7% (93.6%), 75.8% (66.8%), and 92.3% (84.2%), respectively. On the test set, the algorithm achieves an unweighted average of sensitivities of 80.4% and an F1-score of 75.8%. Conclusions: This study provides a potential approach for algorithmic pre-screening in low-resource settings with relatively high expert screening costs. Significance: The proposed method represents a significant step beyond detection of murmurs, providing characterization of intensity, which may provide an enhanced classification of clinical outcomes.

2023

The selection of an optimal segmentation region in physiological signals

Autores
Oliveira, J; Carvalho, M; Nogueira, D; Coimbra, M;

Publicação
INTERNATIONAL TRANSACTIONS IN OPERATIONAL RESEARCH

Abstract
Physiological signals are often corrupted by noisy sources. Usually, artificial intelligence algorithms analyze the whole signal, regardless of its varying quality. Instead, experienced cardiologists search for a high-quality signal segment, where more accurate conclusions can be draw. We propose a methodology that simultaneously selects the optimal processing region of a physiological signal and determines its decoding into a state sequence of physiologically meaningful events. Our approach comprises two phases. First, the training of a neural network that then enables the estimation of the state probability distribution of a signal sample. Second, the use of the neural network output within an integer program. The latter models the problem of finding a time window by maximizing a likelihood function defined by the user. Our method was tested and validated in two types of signals, the phonocardiogram and the electrocardiogram. In phonocardiogram and electrocardiogram segmentation tasks, the system's sensitivity increased on average from 95.1% to 97.5% and from 78.9% to 83.8%, respectively, when compared to standard approaches found in the literature.

2023

Colonoscopic Polyp Detection with Deep Learning Assist

Autores
Neto, A; Couto, D; Coimbra, MT; Cunha, A;

Publicação
Proceedings of the 18th International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications, VISIGRAPP 2023, Volume 4: VISAPP, Lisbon, Portugal, February 19-21, 2023.

Abstract
Colorectal cancer is the third most common cancer and the second cause of cancer-related deaths in the world. Colonoscopic surveillance is extremely important to find cancer precursors such as adenomas or serrated polyps. Identifying small or flat polyps can be challenging during colonoscopy and highly dependent on the colonoscopist's skills. Deep learning algorithms can enable improvement of polyp detection rate and consequently assist to reduce physician subjectiveness and operation errors. This study aims to compare YOLO object detection architecture with self-attention models. In this study, the Kvasir-SEG polyp dataset, composed of 1000 colonoscopy annotated still images, were used to train (700 images) and validate (300images) the performance of polyp detection algorithms. Well-defined architectures such as YOLOv4 and different YOLOv5 models were compared with more recent algorithms that rely on self-attention mechanisms, namely the DETR model, to understand which technique can be more helpful and reliable in clinical practice. In the end, the YOLOv5 proved to be the model achieving better results for polyp detection with 0.81 mAP, however, the DETR had 0.80 mAP proving to have the potential of reaching similar performances when compared to more well-established architectures. © 2023 by SCITEPRESS - Science and Technology Publications, Lda.

2023

Assisted probe guidance in cardiac ultrasound: A review

Autores
Ferraz, S; Coimbra, M; Pedrosa, J;

Publicação
FRONTIERS IN CARDIOVASCULAR MEDICINE

Abstract
Echocardiography is the most frequently used imaging modality in cardiology. However, its acquisition is affected by inter-observer variability and largely dependent on the operator's experience. In this context, artificial intelligence techniques could reduce these variabilities and provide a user independent system. In recent years, machine learning (ML) algorithms have been used in echocardiography to automate echocardiographic acquisition. This review focuses on the state-of-the-art studies that use ML to automate tasks regarding the acquisition of echocardiograms, including quality assessment (QA), recognition of cardiac views and assisted probe guidance during the scanning process. The results indicate that performance of automated acquisition was overall good, but most studies lack variability in their datasets. From our comprehensive review, we believe automated acquisition has the potential not only to improve accuracy of diagnosis, but also help novice operators build expertise and facilitate point of care healthcare in medically underserved areas.

2023

Gastric cancer detection based on Colorectal Cancer transfer learning

Autores
Nobrega, S; Neto, A; Coimbra, M; Cunha, A;

Publicação
2023 IEEE 7TH PORTUGUESE MEETING ON BIOENGINEERING, ENBENG

Abstract
Gastric Cancer (GC) and Colorectal Cancer (CRC) are some of the most common cancers in the world. The most common diagnostic methods are upper endoscopy and biopsy. Possible expert distractions can lead to late diagnosis. GC is a less studied malignancy than CRC, leading to scarce public data that difficult the use of AI detection methods, unlike CRC where public data are available. Considering that CRC endoscopic images present some similarities with GC, a CRC Transfer Learning approach could be used to improve AI GC detectors. This paper evaluates a novel Transfer Learning approach for real-time GC detection, using a YOLOv4 model pre-trained on CRC detection. The results achieved are promising since GC detection improved relatively to the traditional Transfer Learning strategy.

Teses
supervisionadas

2022

Collaborative Tools for Lung Cancer Diagnosis in Computed Tomography

Autor
Carlos Alexandre Nunes Ferreira

Instituição
UP-FEUP

2021

Underwater SLAM in featureless scenarios

Autor
Bruno Lopes Matias

Instituição
UP-FEUP

2021

Deteção de lesões pulmonares para rastreio de COVID-19

Autor
Joana Soares Maximino

Instituição
UP-FCUP

2021

Deep convolutional neural networks for gastric landmark detection

Autor
Inês Filipa Fernandes Videira Lopes

Instituição
UA-UA

2021

Heart Sound Analysis for Cardiovascular Diseases Identification

Autor
Diogo Marcelo Esterlita Nogueira

Instituição
UP-FCUP