2021
Authors
Neto, PC;
Publication
CoRR
Abstract
2023
Authors
Oliveira, SP; Montezuma, D; Moreira, A; Oliveira, D; Neto, PC; Monteiro, A; Monteiro, J; Ribeiro, L; Goncalves, S; Pinto, IM; Cardoso, JS;
Publication
SCIENTIFIC REPORTS
Abstract
Cervical cancer is the fourth most common female cancer worldwide and the fourth leading cause of cancer-related death in women. Nonetheless, it is also among the most successfully preventable and treatable types of cancer, provided it is early identified and properly managed. As such, the detection of pre-cancerous lesions is crucial. These lesions are detected in the squamous epithelium of the uterine cervix and are graded as low- or high-grade intraepithelial squamous lesions, known as LSIL and HSIL, respectively. Due to their complex nature, this classification can become very subjective. Therefore, the development of machine learning models, particularly directly on whole-slide images (WSI), can assist pathologists in this task. In this work, we propose a weakly-supervised methodology for grading cervical dysplasia, using different levels of training supervision, in an effort to gather a bigger dataset without the need of having all samples fully annotated. The framework comprises an epithelium segmentation step followed by a dysplasia classifier (non-neoplastic, LSIL, HSIL), making the slide assessment completely automatic, without the need for manual identification of epithelial areas. The proposed classification approach achieved a balanced accuracy of 71.07% and sensitivity of 72.18%, at the slide-level testing on 600 independent samples, which are publicly available upon reasonable request.
2023
Authors
Montezuma, D; Oliveira, SP; Neto, PC; Oliveira, D; Monteiro, A; Cardoso, JS; Macedo-Pinto, I;
Publication
MODERN PATHOLOGY
Abstract
Training machine learning models for artificial intelligence (AI) applications in pathology often requires extensive annotation by human experts, but there is little guidance on the subject. In this work, we aimed to describe our experience and provide a simple, useful, and practical guide addressing annotation strategies for AI development in computational pathology. Annotation methodology will vary significantly depending on the specific study's objectives, but common difficulties will be present across different settings. We summarize key aspects and issue guiding principles regarding team interaction, ground-truth quality assessment, different annotation types, and available software and hardware options and address common difficulties while annotating. This guide was specifically designed for pathology annotation, intending to help pathologists, other researchers, and AI developers with this process.(c) 2022 THE AUTHORS. Published by Elsevier Inc. on behalf of the United States & Canadian Academy of Pathology. This is an open access article under the CC BY-NC-ND license (http://creativecommons. org/licenses/by-nc-nd/4.0/).
2023
Authors
Neto, PC; Montezuma, D; de Oliveira, SP; Oliveira, D; Fraga, J; Monteiro, A; Monteiro, JC; Ribeiro, L; Gonçalves, S; Reinhard, S; Zlobec, I; Pinto, IM; Cardoso, JS;
Publication
CoRR
Abstract
2022
Authors
Neto, PC; Gonçalves, T; Pinto, JR; Silva, W; Sequeira, AF; Ross, A; Cardoso, JS;
Publication
CoRR
Abstract
2022
Authors
Neto, PC; Boutros, F; Pinto, JR; Damer, N; Sequeira, AF; Cardoso, JS; Bengherabi, M; Bousnat, A; Boucheta, S; Hebbadj, N; Erakin, ME; Demir, U; Ekenel, HK; Vidal, PBD; Menotti, D;
Publication
2022 IEEE INTERNATIONAL JOINT CONFERENCE ON BIOMETRICS (IJCB)
Abstract
This work summarizes the IJCB Occluded Face Recognition Competition 2022 (IJCB-OCFR-2022) embraced by the 2022 International Joint Conference on Biometrics (IJCB 2022). OCFR-2022 attracted a total of 3 participating teams, from academia. Eventually, six valid submissions were submitted and then evaluated by the organizers. The competition was held to address the challenge of face recognition in the presence of severe face occlusions. The participants were free to use any training data and the testing data was built by the organisers by synthetically occluding parts of the face images using a well-known dataset. The submitted solutions presented innovations and performed very competitively with the considered baseline. A major output of this competition is a challenging, realistic, and diverse, and publicly available occluded face recognition benchmark with well defined evaluation protocols.
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