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Publications

Publications by Carlos Baquero

2023

Consistent comparison of symptom-based methods for COVID-19 infection detection

Authors
Rufino, J; Ramirez, J; Baquero, C; Champati, J; Frey, D; Lillo, R; Anta, AF;

Publication
INTERNATIONAL JOURNAL OF MEDICAL INFORMATICS

Abstract
Background: During the global pandemic crisis, various detection methods of COVID-19-positive cases based on self-reported information were introduced to provide quick diagnosis tools for effectively planning and managing healthcare resources. These methods typically identify positive cases based on a particular combination of symptoms, and they have been evaluated using different datasets.Purpose: This paper presents a comprehensive comparison of various COVID-19 detection methods based on self-reported information using the University of Maryland Global COVID-19 Trends and Impact Survey (UMD-CTIS), a large health surveillance platform, which was launched in partnership with Facebook.Methods: Detection methods were implemented to identify COVID-19-positive cases among UMD-CTIS participants reporting at least one symptom and a recent antigen test result (positive or negative) for six countries and two periods. Multiple detection methods were implemented for three different categories: rule-based approaches, logistic regression techniques, and tree-based machine-learning models. These methods were evaluated using different metrics including F1-score, sensitivity, specificity, and precision. An explainability analysis has also been conducted to compare methods.Results: Fifteen methods were evaluated for six countries and two periods. We identify the best method for each category: rule-based methods (F1-score: 51.48% -71.11%), logistic regression techniques (F1-score: 39.91% -71.13%), and tree-based machine learning models (F1-score: 45.07% -73.72%). According to the explainability analysis, the relevance of the reported symptoms in COVID-19 detection varies between countries and years. However, there are two variables consistently relevant across approaches: stuffy or runny nose, and aches or muscle pain.Conclusions: Regarding the categories of detection methods, evaluating detection methods using homogeneous data across countries and years provides a solid and consistent comparison. An explainability analysis of a tree-based machine-learning model can assist in identifying infected individuals specifically based on their relevant symptoms. This study is limited by the self-report nature of data, which cannot replace clinical diagnosis.

2017

Multi-view data types for scalable concurrency in the multi-core era

Authors
Akkoorath, DD; Brandão, J; Bieniusa, A; Baquero, C;

Publication
PMLDC@ECOOP

Abstract

2021

Efficient Replication via Timestamp Stability

Authors
Enes, V; Baquero, C; Gotsman, A; Sutra, P;

Publication
PROCEEDINGS OF THE SIXTEENTH EUROPEAN CONFERENCE ON COMPUTER SYSTEMS (EUROSYS '21)

Abstract
Modern web applications replicate their data across the globe and require strong consistency guarantees for their most critical data. These guarantees are usually provided via state-machine replication (SMR). Recent advances in SMR have focused on leaderless protocols, which improve the availability and performance of traditional Paxos-based solutions. We propose Tempo - a leaderless SMR protocol that, in comparison to prior solutions, achieves superior throughput and offers predictable performance even in contended workloads. To achieve these benefits, Tempo timestamps each application command and executes it only after the timestamp becomes stable, i.e., all commands with a lower timestamp are known. Both the timestamping and stability detection mechanisms are fully decentralized, thus obviating the need for a leader replica. Our protocol furthermore generalizes to partial replication settings, enabling scalability in highly parallel workloads. We evaluate the protocol in both real and simulated geo-distributed environments and demonstrate that it outperforms state-of-the-art alternatives.

2020

Causality is Graphically Simple

Authors
Baquero, C;

Publication
CoRR

Abstract

2020

CoronaSurveys: Using Surveys with Indirect Reporting to Estimate the Incidence and Evolution of Epidemics

Authors
Ojo, O; Agundez, AG; Girault, B; Hernández, H; Cabana, E; García, AG; Arabshahi, P; Baquero, C; Casari, P; Ferreira, EJ; Frey, D; Georgiou, C; Goessens, M; Ishchenko, A; Jiménez, E; Kebkal, O; Lillo, RE; Menezes, R; Nicolaou, N; Ortega, A; Patras, P; Roberts, JC; Stavrakis, E; Tanaka, Y; Anta, AF;

Publication
CoRR

Abstract

2020

Age-Partitioned Bloom Filters

Authors
Shtul, A; Baquero, C; Almeida, PS;

Publication
CoRR

Abstract

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