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Publications

Publications by Jaime Cardoso

2025

H&E to IHC virtual staining methods in breast cancer: an overview and benchmarking

Authors
Klöckner, P; Teixeira, J; Montezuma, D; Fraga, J; Horlings, HM; Cardoso, JS; Oliveira, SP;

Publication
NPJ DIGITAL MEDICINE

Abstract
Immunohistochemistry (IHC) is crucial for the clinical categorisation of breast cancer cases. Deep generative models may offer a cost-effective alternative by virtually generating IHC images from hematoxylin and eosin samples. This review explores the state-of-the-art in virtual staining for breast cancer biomarkers (HER2, PgR, ER and Ki-67) and benchmarks several models on public datasets. It serves as a resource for researchers and clinicians interested in applying or developing virtual staining techniques.

2019

SpaMHMM: Sparse Mixture of Hidden Markov Models for Graph Connected Entities

Authors
Pernes, D; Cardoso, JS;

Publication
CoRR

Abstract

2025

Intrinsically-Interpretable Siamese Networks for Identity Recognition

Authors
Rocha, MA; Cardoso, JS; Montenegro, H;

Publication
2025 IEEE/CVF INTERNATIONAL CONFERENCE ON COMPUTER VISION WORKSHOPS, ICCVW

Abstract
Deep learning models have excelled in computer vision tasks in the past decade, but their lack of transparency raises ethical and legal concerns, especially in high-stakes areas such as surveillance and law enforcement. As such, regulations like the European Union's General Data Protection Regulation are now demanding interpretable Artificial Intelligence systems. This paper focuses on automatic face recognition, where existing systems lack interpretability and research into explainable alternatives is limited. To address this gap, we propose two interpretable facial verification models based on Siamese Networks that match and compare semantically-aligned local regions in the images. Experiments show these models rival and even outperform traditional baselines while offering clearer, more accountable explanations, advancing ethical and legally compliant facial recognition.

2026

Ordinal Semantic Segmentation Applied to Medical and Odontological Images

Authors
Prata Lima, MD; Giraldi, GA; Cardoso, JS;

Publication
CoRR

Abstract

2026

Personalized Cell Segmentation: Benchmark and Framework for Reference-Guided Cell Type Segmentation

Authors
Wang, B; Cardoso, JS; Wu, L;

Publication
CoRR

Abstract

2026

Knowledge Distillation for Lightweight Models in Wildfire Segmentation

Authors
Mamede, RM; Ferreira, LM; Mustafin, M; Caldeira, E; Oliveira, HP; Cardoso, JS; Sequeira, AF;

Publication
ICPRAM

Abstract

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