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Publications

Publications by CRIIS

2022

Monitoring Plant Diversity to Support Agri-Environmental Schemes: Evaluating Statistical Models Informed by Satellite and Local Factors in Southern European Mountain Pastoral Systems

Authors
Monteiro, AT; Alves, P; Carvalho Santos, C; Lucas, R; Cunha, M; da Costa, EM; Fava, F;

Publication
DIVERSITY-BASEL

Abstract
The spatial monitoring of plant diversity in the endangered species-rich grasslands of European mountain pastoral systems is an important step for fairer and more efficient Agri-Environmental policy schemes supporting conservation. This study assessed the underlying support for a spatially explicit monitoring of plant species richness at parcel level (policy making scale) in Southern European mountain grasslands, with statistical models informed by Sentinel-2 satellite and environmental factors. Twenty-four grassland parcels were surveyed for species richness in the Peneda-Geres National Park, northern Portugal. Using a multi-model inference approach, three competing hypotheses guided by the species-scaling theoretical framework were established: species-area (P1), species-energy (P2) and species-spectral heterogeneity (P3), each representing a candidate spatial pathway to predict species richness. To evaluate the statistical support of each spatial pathway, generalized linear models were fitted and model selection based on Akaike information criterion (AIC) was conducted. Later, the performance of the most supported spatial pathway(s) was assessed using a leave-one-out cross validation. A model guided by the species-energy hypothesis (P2) was the most parsimonious spatial pathway to monitor plant species richness in mountain grassland parcels (P2, AICc = 137.6, increment AIC = 0.0, wi = 0.97). Species-area and species-spectral heterogeneity pathways (P1 and P3) were less statistically supported (Delta AICc values in the range 5.7-10.0). The underlying support of the species-energy spatial pathway was based on Sentinel-2 satellite data, namely on the near-infrared (NIR) green ratio in the spring season (NIR/Green(spring)) and on its ratio of change between spring and summer (NIR/Green(change)). Both predictor variables related negatively to species richness. Grassland parcels with lower values of near-infrared (NIR) green ratio and lower seasonal amplitude presented higher species richness records. The leave-one-out cross validation indicated a moderate performance of the species-energy spatial pathway in predicting species richness in the grassland parcels covered by the dataset (R-2 = 0.44, RMSE = 4.3 species, MAE = 3.5 species). Overall, a species-energy framework based on Sentinel 2 data resulted in a promising spatial pathway for the monitoring of species richness in mountain grassland parcels and for informing decision making on Agri-Environmental policy schemes. The near-infrared (NIR) green ratio and its change in time seems a relevant variable to deliver predictions for plant species richness and further research should be conducted on that.

2022

Machine Learning-Based Approaches for Predicting SPAD Values of Maize Using Multi-Spectral Images

Authors
Guo, YH; Chen, SZ; Li, XX; Cunha, M; Jayavelu, S; Cammarano, D; Fu, YS;

Publication
REMOTE SENSING

Abstract
Precisely monitoring the growth condition and nutritional status of maize is crucial for optimizing agronomic management and improving agricultural production. Multi-spectral sensors are widely applied in ecological and agricultural domains. However, the images collected under varying weather conditions on multiple days show a lack of data consistency. In this study, the Mini MCA 6 Camera from UAV platform was used to collect images covering different growth stages of maize. The empirical line calibration method was applied to establish generic equations for radiometric calibration. The coefficient of determination (R-2) of the reflectance from calibrated images and ASD Handheld-2 ranged from 0.964 to 0.988 (calibration), and from 0.874 to 0.927 (validation), respectively. Similarly, the root mean square errors (RMSE) were 0.110, 0.089, and 0.102% for validation using data of 5 August, 21 September, and both days in 2019, respectively. The soil and plant analyzer development (SPAD) values were measured and applied to build the linear regression relationships with spectral and textural indices of different growth stages. The Stepwise regression model (SRM) was applied to identify the optimal combination of spectral and textural indices for estimating SPAD values. The support vector machine (SVM) and random forest (RF) models were independently applied for estimating SPAD values based on the optimal combinations. SVM performed better than RF in estimating SPAD values with R-2 (0.81) and RMSE (0.14), respectively. This study contributed to the retrieval of SPAD values based on both spectral and textural indices extracted from multi-spectral images using machine learning methods.

2022

The Phenolic Composition of Hops (Humulus lupulus L.) Was Highly Influenced by Cultivar and Year and Little by Soil Liming or Foliar Spray Rich in Nutrients or Algae

Authors
Afonso, S; Dias, MI; Ferreira, ICFR; Arrobas, M; Cunha, M; Barros, L; Rodrigues, MA;

Publication
HORTICULTURAE

Abstract
The interest in expanding the production of hops outside the traditional cultivation regions, mainly motivated by the growth of the craft brewery business, justifies the intensification of studies into its adaptation to local growing conditions. In this study, four field trials were undertaken on a twenty-year-old hop garden, over periods of up to three years to assess the effect of important agro-environmental variation factors on hop phenol and phenolic composition and to establish its relationship with the elemental composition of hop cones. All the field trials were arranged as factorial designs exploring the combined effect of: (1) plots of different vigour plants x year; (2) plots of different plant vigor x algae- and nutrient-rich foliar sprays x year; (3) plot x liming x year; and (4) cultivars (Nugget, Cascade, Columbus) x year. Total phenols in hops, were significantly influenced by most of the experimental factors. Foliar spraying and liming were the factors that least influenced the measured variables. The year had the greatest effect on the accumulation of total phenols in hop cones in the different trials and may have contributed to interactions that often occurred between the factors under study. The year average for total phenol concentrations in hop cones ranged from 11.9 mg g(-1) to 21.2 mg g(-1). Significant differences in quantity and composition of phenolic compounds in hop cones were also found between cultivars. The phenolic compounds identified were mainly flavonols (quercetin and kaempferol glycosides) and phenolic carboxylic acids (p-coumaric and caffeic acids).

2022

A satellite-based multi-dimensional approach to identify potential post-fire regime shifts in ecosystem functioning

Authors
Marcos, B; Gonçalves, J; Alcaraz-Segura, D; Cunha, M; Honrado, JP;

Publication
Advances in Forest Fire Research 2022

Abstract
Wildfires can profoundly impact many aspects of matter flows and energy budgets in ecosystems. Exacerbated by projected shifts in climate, land use, and forest management, changes in fire regimes can lead to decreased ecosystem resilience, regime shifts, and ecosystem collapse. Thorough assessments of ecosystem resilience to wildfires are thus critical to bridge gaps between science, policy, and management. To that end, approaches based on ecosystem functioning offer an integrative view of ecosystem responses to wildfire-induced changes and provide quicker, quantifiable responses to disturbances that are more directly connected to ecosystem services. In that regard, satellite remote sensing can be employed to easily and frequently monitor multiple dimensions of ecosystem functioning over large areas and across time, and to evaluate ecosystem functioning resilience to wildfires. This study describes an approach for identifying potential regime shifts based on satellite-based surrogates of four key dimensions of ecosystem functioning: primary production, water content, albedo, and sensible heat. To that end, we classified the trajectories after wildfires in 2005, in NW Iberian Peninsula, for the 2000–2018 period, into five main types, using two metrics of medium-to-long term post-fire recovery. Then, we derived a synthetic indicator to analyse the overall “strength-of-evidence� of potential regime shifts across dimensions. Potential regime shifts were identified for each dimension of ecosystem functioning considered, with the main effects associated with the sudden removal of vegetation. For primary production, regime shifts may be linked to changes in land cover and use, as well as management. Changes in the concentrations of impervious and radiation-absorbing materials following wildfires may be responsible for regime shifts in water content and albedo, with loss of canopy moisture due to fire-related damage leading to vegetation mortality during post-fire recovery. On the other hand, regime shifts in sensible heat were less frequent, since wildfires tend to have transient effects on this dimension of ecosystem functioning. Overall, our results show that our approach successfully captured different patterns of post-fire recovery and resilience across multiple dimensions of ecosystem functioning. We argue that our approach can provide an enhanced characterization of ecosystem resilience to wildfires, and support the identification of potential regime shifts after such disturbances, ultimately upholding promising implications for post-fire ecosystem management.

2022

A Container-Based Framework for Developing ROS Applications

Authors
Melo, P; Arrais, R; Teixeira, S; Veiga, G;

Publication
2022 IEEE 20TH INTERNATIONAL CONFERENCE ON INDUSTRIAL INFORMATICS (INDIN)

Abstract
Modern software engineering practices to enable reproducible and easy to deploy robotics solutions have been embraced in recent years, leading to an increasing adoption of container technologies within the Robot Operating System (ROS) community. However, there is still no common procedure or tools for creating, testing, and deploying containerized ROS packages. A common way to work with containerized ROS applications would prove beneficial by increasing even more the level of collaboration among development teams, help in reusing existing solutions, and automate the development of new ones. This paper presents a software framework to support the development of ROS applications using Docker containers, across all its stages. Besides containerizing ROS packages, the presented tool also assists in the deployment of containerized solutions as well as the creation of complex simulation environments for testing. The tool also provides a way for these simulations to be assessed at run-time using a property-specific language targeting ROS applications. An industrial and a scientific scenario are presented to portray the usage of the proposed tool.

2022

Assessing the potential use of drainage from open soilless production systems: A case study from an agronomic and ecotoxicological perspective

Authors
Santos, MG; Moreira, GS; Pereira, R; Carvalho, SMP;

Publication
AGRICULTURAL WATER MANAGEMENT

Abstract
Cascade cropping systems in soilless horticulture (where drainage collected from the main crop is used in fertigation of secondary crops) are potentially interesting for Mediterranean countries as they enhance water and nutrient use efficiency. However, their agronomic and long-term environmental impact has been poorly addressed. In this case study, lettuce grown hydroponically or in soil (previously exposed to drainage for five years) was fertigated, throughout the cultivation period, with a nutrient solution composed of 0, 25, 50 or 100 % of drainage (0D, 25D, 50D and 100D) mixed with a fresh nutrient solution. Plant performance analysis included growth parameters and leaf mineral composition. Drainage was analyzed for nutrients and Plant Protection Products (PPP) residues, and bioassays were performed exposing aquatic organisms (Raphidocelis subcapitata, Aliivibrio fischeri and Daphnia magna) to drainage and soil elutriate. When analyzing plant performance in both cultivation systems, a significant effect was only found at 100D in hydroponics, resulting in 41 % less leaf area, 20 % smaller head diameter and 43 % lower yield. Drainage analysis showed high nutrient content, presence of PPP residues (up to 6 substances, reaching 3.29 mu g.L-1 in total) and revealed toxicity to D. magna (EC50 = 66.6 %). Moreover, soil elutriate presented toxicity to R. subcapitata (EC50 = 20.6 %) and to A. fischeri (EC50 = 14.9 %). This study demonstrates the potential of using relatively high drainage percentages (up to 50 %) from soilless cultivation systems if applied to hydroponically-grown secondary crops. However, attention should be paid to the use of cascade cropping systems when drainages are applied to fertigate soil-grown crops, as it may contribute to soil degradation and environmental pollution on a long run.

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