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Publications

Publications by Ana Maria Mendonça

2013

Correction of Geometrical Distortions in Bands of Chromatography Images

Authors
Moreira, BM; Sousa, AV; Mendonca, AM; Campilho, A;

Publication
IMAGE ANALYSIS AND RECOGNITION

Abstract
This paper presents a methodology for correcting band distortions in Thin-Layer Chromatography (TLC) images. After the segmentation of image lanes, the intensity profile of each lane column is spatially aligned with a reference profile using a modified version of the Correlation Optimized Warping (COW) algorithm. As the initial partition of the profile into equal length segments proposed by COW can result in the separation of a single band between two segments to be disjointedly aligned, in the proposed method the warping function is only applied to selected profile regions containing groups of adjacent bands. The proposed band correction methodology was assessed using 105 profiles of 105 TLC lanes. A set of features for band characterization was extracted from each lane profile, before and after band distortion correction, and was used as input for three distinct one-class classifiers aiming at band identification. In all cases, the best results of band classification were obtained for the set lanes after band distortion correction.

2013

Automatic localization of the optic disc by combining vascular and intensity information

Authors
Mendonca, AM; Sousa, A; Mendonca, L; Campilho, A;

Publication
COMPUTERIZED MEDICAL IMAGING AND GRAPHICS

Abstract
This paper describes a new methodology for automatic location of the optic disc in retinal images, based on the combination of information taken from the blood vessel network with intensity data. The distribution of vessel orientations around an image point is quantified using the new concept of entropy of vascular directions. The robustness of the method for OD localization is improved by constraining the search for maximal values of entropy to image areas with high intensities. The method was able to obtain a valid location for the optic disc in 1357 out of the 1361 images of the four datasets.

2013

Automatic Estimation of the Arteriolar-to-Venular Ratio in Retinal Images Using a Graph-Based Approach for Artery/Vein Classification

Authors
Dashtbozorg, B; Mendonca, AM; Campilho, A;

Publication
IMAGE ANALYSIS AND RECOGNITION

Abstract
The Arteriolar-to-Venular Ratio (AVR) is a well known index for the diagnosis of diseases such as diabetes, hypertension or cardiovascular pathologies. This paper presents a fully automatic AVR estimation method which uses a graph-based artery/vein classification approach to classify the retinal vessels by a combination of structural information taken from the vasculature graph with intensity features from the original color image. This method was evaluated on the images of the INSPIRE-AVR dataset. The mean error and the correlation coefficient of obtained results with respect to the reference AVR values were identical to the ones obtained by the second observer using a semi-automated system, which demonstrate the potential of the herein proposed solution for clinical application.

2013

Lane Background Removal for the Classification of Thin-Layer Chromatography Images

Authors
Moreira, BM; Sousa, AV; Mendonca, AM; Campilho, A;

Publication
IMAGE ANALYSIS AND RECOGNITION

Abstract
This paper describes a methodology to remove the background of the lanes in Thin Layer Chromatography (TLC) images, aiming at improving band detection and classification. The storage of the biological samples to be analyzed by TLC is usually done via plastic containers. Filter paper is an alternative that allows reduced costs and higher portability, but it increases the complexity of the image analysis stage due to lane background alteration. In order to overcome this problem, a negative control lane is included in every chromatographic plate. After image preprocessing and lane detection stages, a background profile is generated by processing the negative control lane using the Discrete Wavelet Transform (DWT). This profile is then subtracted to the profiles of all other sample lanes in order to overcome the data degradation introduced by filter paper usage. For assessing the proposed background removal process, 105 TLC lanes, with and without background, were used as input for three one-class classifiers. In all cases, the best results were achieved for the lanes after background removal.

2014

RetinaCAD, a System for the Assessment of Retinal Vascular Changes

Authors
Dashtbozorg, B; Mendonca, AM; Penas, S; Campilho, A;

Publication
2014 36TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY (EMBC)

Abstract
This paper introduces RetinaCAD, a system, for the fast, reliable and automatic measurement of the Central Retinal Arteriolar Equivalent (CRAE), the Central Retinal Venular Equivalent (CRVE), and the Arteriolar-to-Venular Ratio (AVR) values, as well as several geometrical features of the retinal vasculature. RetinaCAD identifies important landmarks in the retina, such as the blood vessels and optic disc, and performs artery/vein classification and vessel width measurement. The estimation of the CRAE, CRVE and AVR values on 480 images from 120 subjects has shown a significant correlation between right and left eyes and also between images of same eye acquired with different camera fields of view. AVR estimation in retinal images of 54 subjects showed the lowest values in people with diabetes or high blood pressure thus demonstrating the potential of the system as a CAD tool for early detection and follow-up of diabetes, hypertension or cardiovascular pathologies.

2018

Retinal Image Quality Assessment by Mean-Subtracted Contrast-Normalized Coefficients

Authors
Galdran, A; Araujo, T; Mendonca, AM; Campilho, A;

Publication
VIPIMAGE 2017

Abstract
The automatic assessment of visual quality on images of the eye fundus is an important task in retinal image analysis. A novel quality assessment technique is proposed in this paper. We propose to compute Mean-Subtracted Contrast-Normalized (MSCN) coefficients on local spatial neighborhoods of a given image and analyze their distribution. It is known that for natural images, such distribution behaves normally, while distortions of different kinds perturb this regularity. The combination of MSCN coefficients with a simple measure of local contrast allows us to design a simple but effective retinal image quality assessment algorithm that successfully discriminates between good and low-quality images, while delivering a meaningful quality score. The proposed technique is validated on a recent database of quality-labeled retinal images, obtaining results aligned with state-of-the-art approaches at a low computational cost.

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