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Publications

Publications by CTM

2024

Learning Ordinality in Semantic Segmentation

Authors
Cristino, R; Cruz, RPM; Cardoso, JS;

Publication
CoRR

Abstract

2024

Deep Learning-based Prediction of Breast Cancer Tumor and Immune Phenotypes from Histopathology

Authors
Gonçalves, T; Arias, DP; Willett, J; Hoebel, KV; Cleveland, MC; Ahmed, SR; Gerstner, ER; Cramer, JK; Cardoso, JS; Bridge, CP; Kim, AE;

Publication
CoRR

Abstract

2024

Interpretable AI for medical image analysis: methods, evaluation, and clinical considerations

Authors
Gonçalves, T; Hedström, A; Pahud de Mortanges, A; Li, X; Müller, H; Cardoso, S; Reyes, M;

Publication
Trustworthy Ai in Medical Imaging

Abstract
In the healthcare context, artificial intelligence (AI) has the potential to power decision support systems and help health professionals in their clinical decisions. However, given its complexity, AI is usually seen as a black box that receives data and outputs a prediction. This behavior may jeopardize the adoption of this technology by the healthcare community, which values the existence of explanations to justify a clinical decision. Besides, the developers must have a strategy to assess and audit these systems to ensure their reproducibility and quality in production. The field of interpretable artificial intelligence emerged to study how these algorithms work and clarify their behavior. This chapter reviews several interpretability of AI algorithms for medical imaging, discussing their functioning, limitations, benefits, applications, and evaluation strategies. The chapter concludes with considerations that might contribute to bringing these methods closer to the daily routine of healthcare professionals. © 2025 Elsevier Inc. All rights reserved.

2024

Disentangling morphed identities for face morphing detection

Authors
Caldeira, E; Neto, PC; Gonçalves, T; Damer, N; Sequeira, AF; Cardoso, JS;

Publication
Science Talks

Abstract

2024

Classification of Keratitis from Eye Corneal Photographs using Deep Learning

Authors
Beirão, MM; Matos, J; Gonçalves, T; Kase, C; Nakayama, LF; Freitas, Dd; Cardoso, JS;

Publication
IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024, Lisbon, Portugal, December 3-6, 2024

Abstract
Keratitis is an inflammatory corneal condition responsible for 10% of visual impairment in low- and middle-income countries (LMICs), with bacteria, fungi, or amoeba as the most common infection etiologies. While an accurate and timely diagnosis is crucial for the selected treatment and the patients' sight outcomes, due to the high cost and limited availability of laboratory diagnostics in LMICs, diagnosis is often made by clinical observation alone, despite its lower accuracy. In this study, we investigate and compare different deep learning approaches to diagnose the source of infection: 1) three separate binary models for infection type predictions; 2) a multitask model with a shared backbone and three parallel classification layers (Multitask V1); and, 3) a multitask model with a shared backbone and a multi-head classification layer (Multitask V2). We used a private Brazilian cornea dataset to conduct the empirical evaluation. We achieved the best results with Multitask V2, with an area under the receiver operating characteristic curve (AUROC) confidence intervals of 0.7413-0.7740 (bacteria), 0.83950.8725 (fungi), and 0.9448-0.9616 (amoeba). A statistical analysis of the impact of patient features on models' performance revealed that sex significantly affects amoeba infection prediction, and age seems to affect fungi and bacteria predictions. © 2024 IEEE.

2024

Classification of Keratitis from Eye Corneal Photographs using Deep Learning

Authors
Beirão, MM; Matos, J; Gonçalves, T; Kase, C; Nakayama, LF; Freitas, Dd; Cardoso, JS;

Publication
CoRR

Abstract

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