Cookies Policy
The website need some cookies and similar means to function. If you permit us, we will use those means to collect data on your visits for aggregated statistics to improve our service. Find out More
Accept Reject
  • Menu
Publications

Publications by CTM

2021

Applying Machine Learning for Traffic Forecasting in Porto, Portugal

Authors
Maia, P; Morgado, J; Goncalves, T; Albuquerque, T;

Publication
MACHINE LEARNING AND PRINCIPLES AND PRACTICE OF KNOWLEDGE DISCOVERY IN DATABASES, PT II

Abstract
Pollutant emissions from passenger cars give rise to harmful effects on human health and the environment. Predicting traffic flow is a challenging problem, but essential to understand what factors influence car traffic and what measures should be taken to reduce carbon dioxide emissions. In this work, we developed a predictive model to forecast traffic flow in several locations in the city of Porto for 24 h later, i.e., the next day at the same time. We trained a XGBoost Regressor with multi-modal data from 2018 and 2019 obtained from traffic and weather sensors of the city of Porto and the geographic location of several points of interest. The proposed model achieved a mean absolute error, mean square error, Spearman's rank correlation coefficient, and Pearson correlation coefficient equal to 80.59, 65395, 0.9162, and 0.7816, respectively, when tested on the test set. The developed model makes it possible to analyse which areas of the city of Porto will have more traffic the next day and take measures to optimise this increasing flow of cars. One of the ideas present in the literature is to develop intelligent traffic lights that change their timers according to the expected traffic in the area. This system could help decrease the levels of carbon dioxide emitted and therefore decrease its harmful effects on the health of the population and the environment.

2021

Explainability Metrics of Deep Convolutional Networks for Photoplethysmography Quality Assessment

Authors
Zhang, O; Ding, C; Pereira, T; Xiao, R; Gadhoumi, K; Meisel, K; Lee, RJ; Chen, YR; Hu, X;

Publication
IEEE ACCESS

Abstract
Photoplethysmography (PPG) is a noninvasive way to monitor various aspects of the circulatory system, and is becoming more and more widespread in biomedical processing. Recently, deep learning methods for analyzing PPG have also become prevalent, achieving state of the art results on heart rate estimation, atrial fibrillation detection, and motion artifact identification. Consequently, a need for interpretable deep learning has arisen within the field of biomedical signal processing. In this paper, we pioneer novel explanatory metrics which leverage domain-expert knowledge to validate a deep learning model. We visualize model attention over a whole testset using saliency methods and compare it to human expert annotations. Congruence, our first metric, measures the proportion of model attention within expert-annotated regions. Our second metric, Annotation Classification, measures how much of the expert annotations our deep learning model pays attention to. Finally, we apply our metrics to compare between a signal based model and an image based model for PPG signal quality classification. Both models are deep convolutional networks based on the ResNet architectures. We show that our signal-based one dimensional model acts in a more explainable manner than our image based model; on average 50.78% of the one dimensional model's attention are within expert annotations, whereas 36.03% of the two dimensional model's attention are within expert annotations. Similarly, when thresholding the one dimensional model attention, one can more accurately predict if each pixel of the PPG is annotated as artifactual by an expert. Through this testcase, we demonstrate how our metrics can provide a quantitative and dataset-wide analysis of how explainable the model is.

2021

Deep Learning Based Analysis of Prostate Cancer from MP-MRI

Authors
Neto, PC;

Publication
CoRR

Abstract

2021

Three-sided pyramid wavefront sensor, part 1: simulations and analysis for astronomical adaptive optics

Authors
Schatz, L; Males, JR; Correia, C; Neichel, B; Chambouleyron, V; Codona, J; Fauvarque, O; Sauvage, JF; Fusco, T; Hart, M; Janin Potiron, P; Johnson, R; Long, JD; Mateen, M;

Publication
JOURNAL OF ASTRONOMICAL TELESCOPES INSTRUMENTS AND SYSTEMS

Abstract
The Giant Segmented Mirror Telescopes (GSMTs) including the Giant Magellan Telescope (GMT), the Thirty Meter Telescope (TMT), and the European Extremely Large Telescope (E-ELT), all have extreme adaptive optics (ExAO) instruments planned that will use pyramid wavefront sensors (PWFS). The ExAO instruments all have common features: a high-actuator-count deformable mirror running at extreme speeds (>1 kHz); a high-performance wavefront sensor (WFS); and a high-contrast coronagraph. ExAO WFS performance is currently limited by the need for high spatial sampling of the wavefront which requires large detectors. For ExAO instruments for the next generation of telescopes, alternative architectures of WFS are under consideration because there is a trade-off between detector size, speed, and noise that reduces the performance of GSMT-ExAO wavefront control. One option under consideration for a GSMT-ExAO wavefront sensor is a three-sided PWFS (3PWFS). The 3PWFS creates three copies of the telescope pupil for wavefront sensing, compared to the conventional four-sided PWFS (4PWFS), which uses four pupils. The 3PWFS uses fewer detector pixels than the 4PWFS and should therefore be less sensitive to read noise. Here we develop a mathematical formalism based on the diffraction theory description of the Foucault knife-edge test that predicts the intensity pattern after the PWFS. Our formalism allows us to calculate the intensity in the pupil images formed by the PWFS in the presence of phase errors corresponding to arbitrary Fourier modes. We use these results to motivate how we process signals from a 3PWFS. We compare the raw intensity (RI) method, and derive the Slopes Maps (SM) calculation for the 3PWFS, which combines the three pupil images of the 3PWFS to obtain the X and Y slopes of the wavefront. We then use the Object Oriented MATLAB Adaptive Optics toolbox (OOMAO) to simulate an end-to-end model of an AO system using a PWFS with modulation and compare the performance of the 3PWFS to the 4PWFS. In the case of a low read noise detector, the Strehl ratios of the 3PWFS and 4PWFS are within 0.01. When we included higher read noise in the simulation, we found a Strehl ratio gain of 0.036 for the 3PWFS using RI over the 4PWFS using SM at a stellar magnitude of 10. At the same magnitude, the 4PWFS RI also outperformed the 4PWFS SM, but the gain was only 0.012 Strehl. This is significant because 4PWFS using SM is how the PWFS is conventionally used for AO wavefront sensing. We have found that the 3PWFS is a viable WFS that can fully reconstruct a wavefront and produce a stable closed-loop with correction comparable to that of a 4PWFS, with modestly better performance for high read-noise detectors.

2021

Simultaneous estimation of segmented telescope phasing errors and non-common path aberrations from adaptive-optics-corrected images

Authors
Lamb, MP; Correia, C; Sivanandam, S; Swanson, R; Zavyalova, P;

Publication
MONTHLY NOTICES OF THE ROYAL ASTRONOMICAL SOCIETY

Abstract
We investigate the focal plane wavefront sensing technique, known as Phase Diversity, at the scientific focal plane of a segmented mirror telescope with an adaptive optics (AO) system. We specifically consider an optical system imaging a point source in the context of (i) an artificial source within the telescope structure and (ii) from AO-corrected images of a bright star. From our simulations, we reliably disentangle segmented telescope phasing errors from non-common path aberrations (NCPA) for both a theoretical source and on-sky, AO-corrected images where we have simulated the Keck/NIRC2 system. This quantification from on-sky images is appealing, as it is sensitive to the cumulative wavefront perturbations of the entire optical train; disentanglement of phasing errors and NCPA is therefore critical, where any potential correction to the primary mirror from an estimate must contain minimal NCPA contributions. Our estimates require a 1-min sequence of short-exposure, AO-corrected images; by exploiting a slight modification to the AO-loop, we find that 75 defocused images produce reliable estimates. We demonstrate a correction from our estimates to the primary and deformable mirror results in a wavefront error reduction of up to 67 percent and 65 percent for phasing errors and NCPA, respectively. If the segment phasing errors on the Keck primary are of the order of similar to 130 nm RMS, we show we can improve the H-band Strehl ratio by up to 10 percent by using our algorithm. We conclude our technique works well to estimate NCPA alone from on-sky images, suggesting it is a promising method for any AO-system.

2021

Closed loop predictive control of adaptive optics systems with convolutional neural networks

Authors
Swanson, R; Lamb, M; Correia, CM; Sivanandam, S; Kutulakos, K;

Publication
MONTHLY NOTICES OF THE ROYAL ASTRONOMICAL SOCIETY

Abstract
Predictive wavefront control is an important and rapidly developing field of adaptive optics (AO). Through the prediction of future wavefront effects, the inherent AO system servo-lag caused by the measurement, computation, and application of the wavefront correction can be significantly mitigated. This lag can impact the final delivered science image, including reduced strehl and contrast, and inhibits our ability to reliably use faint guide stars. We summarize here a novel method for training deep neural networks for predictive control based on an adversarial prior. Unlike previous methods in the literature, which have shown results based on previously generated data or for open-loop systems, we demonstrate our network's performance simulated in closed loop. Our models are able to both reduce effects induced by servo-lag and push the faint end of reliable control with natural guide stars, improving K-band Strehl performance compared to classical methods by over 55 per cent for 16th magnitude guide stars on an 8-m telescope. We further show that LSTM based approaches may be better suited in high-contrast scenarios where servo-lag error is most pronounced, while traditional feed forward models are better suited for high noise scenarios. Finally, we discuss future strategies for implementing our system in real-time and on astronomical telescope systems.

  • 110
  • 369