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Publications

Publications by HumanISE

2019

Training Biomedical Researchers in Metadata with a MIBBI-Based Ontology

Authors
Sampaio, M; Ferreira, AL; Castro, JA; Ribeiro, C;

Publication
Metadata and Semantic Research - 13th International Conference, MTSR 2019, Rome, Italy, October 28-31, 2019, Revised Selected Papers

Abstract
Recent initiatives in data management recognize that involving the researchers is one of the more problematic issues and that taking into account the practices of each domain can ease this process. We describe here an experiment in the adoption of data description by researchers in the biomedical domain. We started with a generic lightweight ontology based on the Minimum Information for Biological and Biomedical Investigations (MIBBI) standard and presented it to researchers from the Institute of Innovation and Investigation in Health (I3S) in Porto. This resulted in seven interviews and four data description sessions using a RDM platform. The feedback from researchers shows that this intentionally restricted ontology favours an easy entry point into RDM but does not prevent them from identifying the limitations of the model and pinpointing their specific domain requirements. To complete the experiment, we collected the extra descriptors suggested by the researchers and compared them to the full MIBBI. Part of these new descriptors can be obtained from the standard, reinforcing the importance of common metadata models for broad domains such as biomedical research. © 2019, Springer Nature Switzerland AG.

2019

The Perdigao: Peering into Microscale Details of Mountain Winds

Authors
Fernando, HJS; Mann, J; Palma, JMLM; Lundquist, JK; Barthelmie, RJ; Belo Pereira, M; Brown, WOJ; Chow, FK; Gerz, T; Hocut, CM; Klein, PM; Leo, LS; Matos, JC; Oncley, SP; Pryor, SC; Bariteau, L; Bell, TM; Bodini, N; Carney, MB; Courtney, MS; Creegan, ED; Dimitrova, R; Gomes, S; Hagen, M; Hyde, JO; Kigle, S; Krishnamurthy, R; Lopes, JC; Mazzaro, L; Neher, JMT; Menke, R; Murphy, P; Oswald, L; Otarola Bustos, S; Pattantyus, AK; Veiga Rodrigues, CV; Schady, A; Sirin, N; Spuler, S; Svensson, E; Tomaszewski, J; Turner, DD; van Veen, L; Vasiljevic, N; Vassallo, D; Voss, S; Wildmann, N; Wang, Y;

Publication
BULLETIN OF THE AMERICAN METEOROLOGICAL SOCIETY

Abstract
A grand challenge from the wind energy industry is to provide reliable forecasts on mountain winds several hours in advance at microscale (similar to 100 m) resolution. This requires better microscale wind-energy physics included in forecasting tools, for which field observations are imperative. While mesoscale (similar to 1 km) measurements abound, microscale processes are not monitored in practice nor do plentiful measurements exist at this scale. After a decade of preparation, a group of European and U.S. collaborators conducted a field campaign during 1 May-15 June 2017 in Vale Cobrao in central Portugal to delve into microscale processes in complex terrain. This valley is nestled within a parallel double ridge near the town of Perdigao with dominant wind climatology normal to the ridges, offering a nominally simple yet natural setting for fundamental studies. The dense instrument ensemble deployed covered a similar to 4 km x 4 km swath horizontally and similar to 10 km vertically, with measurement resolutions of tens of meters and seconds. Meteorological data were collected continuously, capturing multiscale flow interactions from synoptic to microscales, diurnal variability, thermal circulation, turbine wake and acoustics, waves, and turbulence. Particularly noteworthy are the extensiveness of the instrument array, space-time scales covered, use of leading-edge multiple-lidar technology alongside conventional tower and remote sensors, fruitful cross-Atlantic partnership, and adaptive management of the campaign. Preliminary data analysis uncovered interesting new phenomena. All data are being archived for public use.

2019

Empowering Distributed Analysis Across Federated Cohort Data Repositories Adhering to FAIR Principles

Authors
Rocha, A; Ornelas, JP; Lopes, JC; Camacho, R;

Publication
ERCIM NEWS

Abstract
Novel data collection tools, methods and new techniques in biotechnology can facilitate improved health strategies that are customised to each individual. One key challenge to achieve this is to take advantage of the massive volumes of personal anonymous data, relating each profile to health and disease, while accounting for high diversity in individuals, populations and environments. These data must be analysed in unison to achieve statistical power, but presently cohort data repositories are scattered, hard to search and integrate, and data protection and governance rules discourage central pooling.

2019

Automatic Calibration of Performance Indicators for Performance Analysis in Software Development (S)

Authors
Raza, M; Faria, JP;

Publication
The 31st International Conference on Software Engineering and Knowledge Engineering, SEKE 2019, Hotel Tivoli, Lisbon, Portugal, July 10-12, 2019.

Abstract
ProcessPAIR is a novel method and tool for automating the performance analysis in software development. Based on performance models structured by process experts and calibrated from the performance data of many developers, it automatically identifies and ranks potential performance problems and root causes of individual developers. However, the current calibration method is not fully automatic, because, in the case of performance indicators that affect other indicators in a conflicting way, the process expert has to manually calibrate the optimal value in a way that balances those impacts. In this paper we propose a novel method to automate this step, taking advantage of training data sets. We demonstrate the feasibility of the method with an example related with the Code Review Rate indicator, with conflicting impacts on Productivity and Quality.

2019

Message from the a- Most 2019 chairs

Authors
Hierons, R; Núñez, M; Pretschner, A; Gargantini, A; Faria, JP; Wang, S;

Publication
Proceedings - 2019 IEEE 12th International Conference on Software Testing, Verification and Validation Workshops, ICSTW 2019

Abstract

2019

Local Observability and Controllability Enforcement in Distributed Testing

Authors
Lima, B; Faria, JP; Hierons, RM;

Publication
Quality of Information and Communications Technology - 12th International Conference, QUATIC 2019, Ciudad Real, Spain, September 11-13, 2019, Proceedings

Abstract
To ensure interoperability and the correct end-to-end behavior of heterogenous distributed systems, it is important to conduct integration tests that verify the interactions with the environment and between the system components in key scenarios. The automation of such integration tests requires that test components are also distributed, with local testers deployed close to the system components, coordinated by a central tester. In such a test architecture, it is important to maximize the autonomy of the local testers to minimize the communication overhead and maximize the fault detection capability. A test scenario is called locally observable and locally controllable, if conformance errors can be detected locally and test inputs can be decided locally, respectively, by the local testers, without the need for exchanging coordination messages between the test components during test execution (i.e., without any communication overhead). For test scenarios specified by means of UML sequence diagrams that don’t exhibit those properties, we present in this paper an approach with tool support to automatically find coordination messages that, added to the given scenario, make it locally controllable and locally observable. © Springer Nature Switzerland AG 2019.

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