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About

About

During my master's degree I acquired knowledge in the field of Neuroscience, Applied Physics, Signal Processing, Brain imaging Techniques and machine learning. In my master thesis, I used signal processing methods and machine learning techniques and contributed by creating knowledge to the future development of systems for human attention training. I have conducted a study in order to identify the most reliable parameters in brain electrical (EEG) signals and ocular activity for predicting fluctuations in attention, and developed a classification platform based on those features. I collected EEG signals and eye measures from 21 healthy subjects. I concluded that phase coherence (synchrony) of EEG signals and pupil diameter can be used for predicting fluctuations in attention levels. I was also enrolled, in 2015, in a FCT Research Grant, in which I developed biometric ECG-based algorithms in a partnership with an industrial partner. 

Since January 2016 I have been developing a PhD research project within the scope of near-field optical probes for optogenetic applications in neurological diseases, such Parkinson, and other psychiatric diseases as Depression or Bipolar Disorders. I am currently studying applied photonics to biomedical applications. I am therefore extremely interested in and enthusiastic about pursuing further study in the field of Medical Applied Physics. I believe that my research experience in Applied Neuroscience’s field and Optics is a particular strength given my interest in following this research line. During my studies and my current research project, I have managed to integrate myself in several research teams, interacting with different persons and different working methods thus demonstrating important skills necessary to pursue the proposed research project.

During my studies at UC, I have attended to several conferences and courses of my research area. I have enrolled in an English Language Course of 120 hours at Faculty of Letters of the University of Coimbra (two semesters). In addition, I wrote some articles for the Physiscs Department Journal. 
I have also received two awards for being one of the top 3% students of the Integrated Master in Biomedical Engineering in 2013 and 2014. Recently, I also won a Full Travel Grant in order to attend to the International School on Light Sciences and Technologies, in Santander, Spain, 2016.

Interest
Topics
Details

Details

  • Name

    Joana Isabel Paiva
  • Role

    External Research Collaborator
  • Since

    15th September 2014
  • Nationality

    Portugal
  • Contacts

    +351222094106
    joana.i.paiva@inesctec.pt
Publications

2021

"Ethics against Chemistry": Solving a Crime Using Chemistry Concepts and Storytelling in a History of Science-Based Interactive Game for Middle School Students

Authors
Dias, D; Ferraz Caetano, J; Paiva, J;

Publication
JOURNAL OF CHEMICAL EDUCATION

Abstract
Designing a science activity for middle school children is a challenging task, especially if it aims to be interdisciplinary. One may ask if it is possible to craft a positive learning experience from different areas such as history of science, chemistry, or ethics. In this paper, we argue it can be achieved if we use the right tools to engage a young audience. A combination of gamification, hands-on activities, and storytelling techniques was successfully used, providing a unique form to approach chemistry and ethics subjects in an "edutainment" format. The result is a game that challenges participants to solve a crime, while addressing chemistry topics to gather pieces of evidence and facing science-related ethical conundrums. In our pilot study, participants evaluated this activity positively, identifying the innovation and entertaining features as the most relevant in their gaming experience.

2021

x Forecasting COVID-19 Severity by Intelligent Optical Fingerprinting of Blood Samples

Authors
Faria, SP; Carpinteiro, C; Pinto, V; Rodrigues, SM; Alves, J; Marques, F; Lourenco, M; Santos, PH; Ramos, A; Cardoso, MJ; Guimaraes, JT; Rocha, S; Sampaio, P; Clifton, DA; Mumtaz, M; Paiva, JS;

Publication
DIAGNOSTICS

Abstract
Forecasting COVID-19 disease severity is key to supporting clinical decision making and assisting resource allocation, particularly in intensive care units (ICUs). Here, we investigated the utility of time- and frequency-related features of the backscattered signal of serum patient samples to predict COVID-19 disease severity immediately after diagnosis. ICU admission was the primary outcome used to define disease severity. We developed a stacking ensemble machine learning model including the backscattered signal features (optical fingerprint), patient comorbidities, and age (AUROC = 0.80), which significantly outperformed the predictive value of clinical and laboratory variables available at hospital admission (AUROC = 0.71). The information derived from patient optical fingerprints was not strongly correlated with any clinical/laboratory variable, suggesting that optical fingerprinting brings unique information for COVID-19 severity risk assessment. Optical fingerprinting is a label-free, real-time, and low-cost technology that can be easily integrated as a front-line tool to facilitate the triage and clinical management of COVID-19 patients.

2020

iLoF: An intelligent Lab on Fiber Approach for Human Cancer Single-Cell Type Identification

Authors
Paiva, JS; Jorge, PAS; Ribeiro, RSR; Balmana, M; Campos, D; Mereiter, S; Jin, CS; Karlsson, NG; Sampaio, P; Reis, CA; Cunha, JPS;

Publication
SCIENTIFIC REPORTS

Abstract
With the advent of personalized medicine, there is a movement to develop "smaller" and "smarter" microdevices that are able to distinguish similar cancer subtypes. Tumor cells display major differences when compared to their natural counterparts, due to alterations in fundamental cellular processes such as glycosylation. Glycans are involved in tumor cell biology and they have been considered to be suitable cancer biomarkers. Thus, more selective cancer screening assays can be developed through the detection of specific altered glycans on the surface of circulating cancer cells. Currently, this is only possible through time-consuming assays. In this work, we propose the "intelligent" Lab on Fiber (iLoF) device, that has a high-resolution, and which is a fast and portable method for tumor single-cell type identification and isolation. We apply an Artificial Intelligence approach to the back-scattered signal arising from a trapped cell by a micro-lensed optical fiber. As a proof of concept, we show that iLoF is able to discriminate two human cancer cell models sharing the same genetic background but displaying a different surface glycosylation profile with an accuracy above 90% and a speed rate of 2.3 seconds. We envision the incorporation of the iLoF in an easy-to-operate microchip for cancer identification, which would allow further biological characterization of the captured circulating live cells.

2019

Optical fiber-based sensing method for nanoparticle detection through supervised back-scattering analysis: a potential contributor for biomedicine

Authors
Paiva, JS; Jorge, PAS; Ribeiro, RSR; Sampaio, P; Rosa, CC; Cunha, JPS;

Publication
INTERNATIONAL JOURNAL OF NANOMEDICINE

Abstract
Background: In view of the growing importance of nanotechnologies, the detection/identification of nanoparticles type has been considered of utmost importance. Although the characterization of synthetic/organic nanoparticles is currently considered a priority (eg, drug delivery devices, nanotextiles, theranostic nanoparticles), there are many examples of "naturally" generated nanostructures - for example, extracellular vesicles (EVs), lipoproteins, and virus - that provide useful information about human physiology or clinical conditions. For example, the detection of tumor-related exosomes, a specific type of EVs, in circulating fluids has been contributing to the diagnosis of cancer in an early stage. However, scientists have struggled to find a simple, fast, and low-cost method to accurately detect/identify these nanoparticles, since the majority of them have diameters between 100 and 150 nm, thus being far below the diffraction limit. Methods: This study investigated if, by projecting the information provided from short-term portions of the back-scattered laser light signal collected by a polymeric lensed optical fiber tip dipped into a solution of synthetic nanoparticles into a lower features dimensional space, a discriminant function is able to correctly detect the presence of 100 nm synthetic nanoparticles in distilled water, in different concentration values. Results and discussion: This technique ensured an optimal performance (100% accuracy) in detecting nanoparticles for a concentration above or equal to 3.89 mu g/mL (8.74E+10 particles/mL), and a performance of 90% for concentrations below this value and higher than 1.22E-03 mu g/mL (2.74E+07 particles/mL), values that are compatible with human plasmatic levels of tumor-derived and other types of EVs, as well as lipoproteins currently used as potential biomarkers of cardiovascular diseases. Conclusion: The proposed technique is able to detect synthetic nanoparticles whose dimensions are similar to EVs and other "clinically" relevant nanostructures, and in concentrations equivalent to the majority of cell-derived, platelet-derived EVs and lipoproteins physiological levels. This study can, therefore, provide valuable insights towards the future development of a device for EVs and other biological nanoparticles detection with innovative characteristics.

2019

Optical Fiber-based Sensing Method for Nanoparticles Detection through Back-Scattering Signal Analysis

Authors
Paiva, JS; Ribeiro, RSR; Jorge, PAS; Rosa, CC; Sampaio, P; Cunha, JPS;

Publication
OPTICAL FIBERS AND SENSORS FOR MEDICAL DIAGNOSTICS AND TREATMENT APPLICATIONS XIX

Abstract
In view of the growing importance of nanotechnologies, the detection of nanoparticles type in several contexts has been considered a relevant topic. Several organisms, including the National Institutes of Health, have been highlighting the urge of developing nanoparticles exposure risk assessment assays, since very little is known about their physiological responses. Although the identi fi cation/characterization of synthetically produced nanoparticles is considered a priority, there are many examples of \ naturally" generated nanostructures that provide useful information about food components or human physiology. In fact, several nanoscale extracellular vesicles are present in physiological fluids with high potential as cancer biomarkers. However, scientists have struggled to fi nd a simple and rapid method to accurately detect/identify nanoparticles, since their majority have diameters between 100-150 nm -far below the di ff raction limit. Currently, there is a lack of instruments for nanoparticles detection and the few instrumentation that is commonly used is costly, bulky, complex and time consuming. Thus, considering our recent studies on particles identi fi cation through back-scattering, we examined if the time/frequency-domain features of the back-scattered signal provided from a 100 nm polystyrene nanoparticles suspension are able to detect their presence only by dipping a polymeric lensed optical fi ber in the solution. This novel technique allowed the detection of synthetic nanoparticles in distilled water versus \ blank solutions" (only distilled water) through Multivariate Statistics and Arti fi cial Intelligence (AI)-based techniques. While the state-of-the-art methods do not o ff er a ff ordable and simple approaches for nanoparticles detection, our technique can contribute for the development of a device with innovative characteristics.