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Publicações

2017

Metabolic constraints and quantitative design principles in gene expression during adaption of yeast to heat shock

Autores
Pereira, T; Vilaprinyo, E; Belli, G; Herrero, E; Salvado, B; Sorribas, A; Altés, G; Alves, R;

Publicação

Abstract
AbstractMicroorganisms evolved adaptive responses that enable them to survive stressful challenges in ever changing environments by adjusting metabolism through the modulation of gene expression, protein levels and activity, and flow of metabolites. More frequent challenges allow natural selection ampler opportunities to select from a larger number of phenotypes that are compatible with survival. Understanding the causal relationships between physiological and metabolic requirements that are needed for cellular stress adaptation and gene expression changes that are used by organisms to achieve those requirements may have a significant impact in our ability to interpret and/or guide evolution.Here, we study those causal relationships during heat shock adaptation in the yeastSaccharomyces cerevisiae. We do so by combining dozens of independent experiments measuring whole genome gene expression changes during stress response with a nonlinear simplified kinetic model of central metabolism.This combination is used to create a quantitative, multidimensional, genotype-to-phenotype mapping of the metabolic and physiological requirements that enable cell survival to the feasible changes in gene expression that modulate metabolism to achieve those requirements. Our results clearly show that the feasible changes in gene expression that enable survival to heat shock are specific for this stress. In addition, they suggest that genetic programs for adaptive responses to desiccation/rehydration and to pH shifts might be selected by physiological requirements that are qualitatively similar, but quantitatively different to those for heat shock adaptation. In contrast, adaptive responses to other types of stress do not appear to be constrained by the same qualitative physiological requirements. Our model also explains at the mechanistic level how evolution might find different sets of changes in gene expression that lead to metabolic adaptations that are equivalent in meeting physiological requirements for survival. Finally, our results also suggest that physiological requirements for heat shock adaptation might be similar between unicellular ascomycetes that live in similar environments. Our analysis is likely to be scalable to other adaptive response and might inform efforts in developing biotechnological applications to manipulate cells for medical, biotechnological, or synthetic biology purposes.

2017

HIGHER EDUCATION AND THE PROBLEM OF ABANDONMENT – HOW CAN WE KEEP STUDENTS FROM LEAVING?

Autores
Au-Yong-Oliveira, M; Vitória, A; Silva, C; Carlos, V; Moutinho, V; Moreira, G; Paiva Dias, G;

Publicação
INTED2017 Proceedings

Abstract

2017

Modeling, Dynamics, Optimization and Bioeconomics II

Autores
Pinto, AA; Zilberman, D;

Publicação
Springer Proceedings in Mathematics and Statistics

Abstract

2017

An evolutionary algorithm for clustering data streams with a variable number of clusters

Autores
Silva, JD; Hruschka, ER; Gama, J;

Publicação
EXPERT SYSTEMS WITH APPLICATIONS

Abstract
Several algorithms for clustering data streams based on k-Means have been proposed in the literature. However, most of them assume that the number of clusters, k, is known a priori by the user and can be kept fixed throughout the data analySis process. Besides the difficulty in choosing k, data stream clustering imposes several challenges to be addressed, such as addressing non-stationary, unbounded data that arrive in an online fashion. In this paper, we propose a Fast Evolutionary Algorithm for Clustering data streams (FEAC-Stream) that allows estimating k automatically from data in an online fashion. FEAC-Stream uses the Page-Hinkley Test to detect eventual degradation in the quality of the induced clusters, thereby triggering an evolutionary algorithm that re-estimates k accordingly. FEAC-Stream relies on the assumption that clusters of (partially unknown) data can provide useful information about the dynamics of the data stream. We illustrate the potential of FEAC-Stream in a set of experiments using both synthetic and real-world data streams, comparing it to four related algorithms, namely: CluStream-OMRk, CluStream-BkM, StreamKM++-OMRk and StreamKM++-BkM. The obtained results show that FEAC-Stream provides good data partitions and that it can detect, and accordingly react to, data changes.

2017

Experimental Results on a Wireless Wattmeter Device for the Integration in Home Energy Management Systems

Autores
Rodrigues, EMG; Godina, R; Shafie khah, M; Catalao, JPS;

Publicação
ENERGIES

Abstract
This paper presents a home area network (HAN)-based domestic load energy consumption monitoring prototype device as part of an advanced metering system (AMS). This device can be placed on individual loads or configured to measure several loads as a whole. The wireless communication infrastructure is supported on IEEE 805.12.04 radios that run a ZigBee stack. Data acquisition concerning load energy transit is processed in real time and the main electrical parameters are then transmitted through a RF link to a wireless terminal unit, which works as a data logger and as a human-machine interface. Voltage and current sensing are implemented using Hall effect principle-based transducers, while C code is developed on two 16/32-bit microcontroller units (MCUs). The main features and design options are then thoroughly discussed. The main contribution of this paper is that the proposed metering system measures the reactive energy component through the Hilbert transform for low cost measuring device systems.

2017

Mobile Augmented Reality in Cultural Heritage Context: Current Technologies

Autores
Marto, AGR; Augusto de Sousa, AA; Marques Goncalves, AJM;

Publicação
2017 24 ENCONTRO PORTUGUES DE COMPUTACAO GRAFICA E INTERACAO (EPCGI)

Abstract
The use of augmented reality has a great potential applied to several areas, in particular, for cultural heritage context where it became possible to display, in loco, virtual elements which complement the user's real scenario. Due to technological advances, differentiated ways of experience this technology has been explored, providing to common user, the access to this technology, until recently, quite limited, especially, in public locations. This article presents a work which includes implementation and evaluation of distinct applications of augmented reality - using smartphones - based on different techniques and tools. The evaluation intends to identify a solution to be implemented in a cultural heritage context, namely, the ruins of the Museu Monografico de Conimbriga

  • 2022
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