2018
Autores
Barbeira, AN; Dickinson, SP; Bonazzola, R; Zheng, J; Wheeler, HE; Torres, JM; Torstenson, ES; Shah, KP; Garcia, T; Edwards, TL; Stahl, EA; Huckins, LM; Aguet, F; Ardlie, KG; Cummings, BB; Gelfand, ET; Getz, G; Hadley, K; Handsaker, RE; Huang, KH; Kashin, S; Karczewski, KJ; Lek, M; Li, X; MacArthur, DG; Nedzel, JL; Nguyen, DT; Noble, MS; Segrè, AV; Trowbridge, CA; Tukiainen, T; Abell, NS; Balliu, B; Barshir, R; Basha, O; Battle, A; Bogu, GK; Brown, A; Brown, CD; Castel, SE; Chen, LS; Chiang, C; Conrad, DF; Damani, FN; Davis, JR; Delaneau, O; Dermitzakis, ET; Engelhardt, BE; Eskin, E; Ferreira, PG; Frésard, L; Gamazon, ER; Garrido Martín, D; Gewirtz, ADH; Gliner, G; Gloudemans, MJ; Guigo, R; Hall, IM; Han, B; He, Y; Hormozdiari, F; Howald, C; Jo, B; Kang, EY; Kim, Y; Kim Hellmuth, S; Lappalainen, T; Li, G; Li, X; Liu, B; Mangul, S; McCarthy, MI; McDowell, IC; Mohammadi, P; Monlong, J; Montgomery, SB; Muñoz Aguirre, M; Ndungu, AW; Nobel, AB; Oliva, M; Ongen, H; Palowitch, JJ; Panousis, N; Papasaikas, P; Park, Y; Parsana, P; Payne, AJ; Peterson, CB; Quan, J; Reverter, F; Sabatti, C; Saha, A; Sammeth, M; Scott, AJ; Shabalin, AA; Sodaei, R; Stephens, M; Stranger, BE; Strober, BJ; Sul, JH; Tsang, EK; Urbut, S; Van De Bunt, M; Wang, G; Wen, X; Wright, FA; Xi, HS; Yeger Lotem, E; Zappala, Z; Zaugg, JB; Zhou, YH; Akey, JM; Bates, D; Chan, J; Claussnitzer, M; Demanelis, K; Diegel, M; Doherty, JA; Feinberg, AP; Fernando, MS; Halow, J; Hansen, KD; Haugen, E; Hickey, PF; Hou, L; Jasmine, F; Jian, R; Jiang, L; Johnson, A; Kaul, R; Kellis, M; Kibriya, MG; Lee, K; Li, JB; Li, Q; Lin, J; Lin, S; Linder, S; Linke, C; Liu, Y; Maurano, MT; Molinie, B; Nelson, J; Neri, FJ; Park, Y; Pierce, BL; Rinaldi, NJ; Rizzardi, LF; Sandstrom, R; Skol, A; Smith, KS; Snyder, MP; Stamatoyannopoulos, J; Tang, H; Wang, L; Wang, M; Van Wittenberghe, N; Wu, F; Zhang, R; Nierras, CR; Branton, PA; Carithers, LJ; Guan, P; Moore, HM; Rao, A; Vaught, JB; Gould, SE; Lockart, NC; Martin, C; Struewing, JP; Volpi, S; Addington, AM; Koester, SE; Little, AR; Brigham, LE; Hasz, R; Hunter, M; Johns, C; Johnson, M; Kopen, G; Leinweber, WF; Lonsdale, JT; McDonald, A; Mestichelli, B; Myer, K; Roe, B; Salvatore, M; Shad, S; Thomas, JA; Walters, G; Washington, M; Wheeler, J; Bridge, J; Foster, BA; Gillard, BM; Karasik, E; Kumar, R; Miklos, M; Moser, MT; Jewell, SD; Montroy, RG; Rohrer, DC; Valley, DR; Davis, DA; Mash, DC; Undale, AH; Smith, AM; Tabor, DE; Roche, NV; McLean, JA; Vatanian, N; Robinson, KL; Sobin, L; Barcus, ME; Valentino, KM; Qi, L; Hunter, S; Hariharan, P; Singh, S; Um, KS; Matose, T; Tomaszewski, MM; Barker, LK; Mosavel, M; Siminoff, LA; Traino, HM; Flicek, P; Juettemann, T; Ruffier, M; Sheppard, D; Taylor, K; Trevanion, SJ; Zerbino, DR; Craft, B; Goldman, M; Haeussler, M; Kent, WJ; Lee, CM; Paten, B; Rosenbloom, KR; Vivian, J; Zhu, J; Nicolae, DL; Cox, NJ; Im, HK;
Publicação
Nature Communications
Abstract
Scalable, integrative methods to understand mechanisms that link genetic variants with phenotypes are needed. Here we derive a mathematical expression to compute PrediXcan (a gene mapping approach) results using summary data (S-PrediXcan) and show its accuracy and general robustness to misspecified reference sets. We apply this framework to 44 GTEx tissues and 100+ phenotypes from GWAS and meta-analysis studies, creating a growing public catalog of associations that seeks to capture the effects of gene expression variation on human phenotypes. Replication in an independent cohort is shown. Most of the associations are tissue specific, suggesting context specificity of the trait etiology. Colocalized significant associations in unexpected tissues underscore the need for an agnostic scanning of multiple contexts to improve our ability to detect causal regulatory mechanisms. Monogenic disease genes are enriched among significant associations for related traits, suggesting that smaller alterations of these genes may cause a spectrum of milder phenotypes. © 2018 The Author(s).
2018
Autores
Garcia, KD; de Carvalho, ACPLF; Moreira, JM;
Publicação
Intelligent Data Engineering and Automated Learning - IDEAL 2018 - 19th International Conference, Madrid, Spain, November 21-23, 2018, Proceedings, Part I
Abstract
Data stream is a challenging research topic in which data can continuously arrive with a probability distribution that may change over time. Depending on the changes in the data distribution, different phenomena can occur, for example, a concept drift. A concept drift occurs when the concepts associated with a dataset change when new data arrive. This paper proposes a new method based on k-Nearest Neighbors that implements a sliding window requiring less instances stored for training than existing methods. For such, a clustering approach is used to summarize data by placing labeled instances considered similar in the same cluster. Besides, instances close to the uncertainty border of existing classes are also stored, in a sliding window, to adapt the model to concept drift. The proposed method is experimentally compared with state-of-the-art classifiers from the data stream literature, regarding accuracy and processing time. According to the experimental results, the proposed method has better accuracy and less time consumption when fewer information about the concepts are stored in a single sliding window. © 2018, Springer Nature Switzerland AG.
2018
Autores
Lino, AS; Reis da Rocha, AMR; Reis, LP;
Publicação
2018 13TH IBERIAN CONFERENCE ON INFORMATION SYSTEMS AND TECHNOLOGIES (CISTI)
Abstract
Maintaining the quality control of scientific literature is one of the main characteristics of the peer review process. However, it depends on the peers' effectiveness in minimizing the intrinsic subjectivity to the process. Publishers try to achieve this through training and guides for reviewers. However, there is no consensus as to what the main criteria for a good review are, which results in poorly reasoned or vague reports that do not assist the editor in his decision nor the author in improvement of research. This project proposes a quality model for reviewing articles and a framework for their automatic classification through machine learning techniques. This proposal will be useful for: i) reviewers as a guideline for the preparation of the review report, editors as an indicator of the quality of the received revisions, and the authors as a model for self-evaluation of their research.
2018
Autores
Fonseca Ferreira, NMF; Freitas, EDC;
Publicação
2018 IEEE 16TH INTERNATIONAL CONFERENCE ON INDUSTRIAL INFORMATICS (INDIN)
Abstract
This paper describes a two-month summer intensive course designed to introduce participants with a hands-on technical craft on robotics and to acquire experience in the low-level details of embedded systems. Attendants started this course with a brief introduction to robotics; learned to draw, design and create a personalized 3D structure for their mobile robotic platform and developed skills in embedded systems. They were familiarize with the practices used in robotics, learning to connect all sensors and actuator, developing a typical application on differential kinematic using Arduino, exploring ROS features under Raspberry Pi environment and Arduino - Raspberry Pi communication. Different paradigms and some real applications and programming were addressed on the topic of Artificial Intelligence. This paper describes not just the concept, layout and methodology used on RobotCraft 2017 but also presents the participants knowledge background and their overall opinions, leading to focus on lessons learned and suggestions for future editions.
2018
Autores
Durães, D; Carneiro, D; Jiménez, A; Novais, P;
Publicação
Neurocomputing
Abstract
2018
Autores
Kurunathan, H; Severino, R; Koubaa, A; Tovar, E;
Publicação
Proceedings - 17th ACM/IEEE International Conference on Information Processing in Sensor Networks, IPSN 2018
Abstract
Deterministic Synchronous Multichannel Extension (DSME) is a prominent MAC behavior first introduced in IEEE 802.15.4e that supports deterministic guarantees using its multisuperframe structure. DSME also facilitates techniques like multi-channel and CAP reduction that help to increase the number of available guaranteed timeslots in a network. However, no tuning of these functionalities in dynamic scenarios is supported in the standard. In this paper, we present an effective multisuperframe tuning technique that also helps to utilize CAP reduction in an effective manner improving flexibility and scalability, while guaranteeing bounded delay. © 2018 IEEE.
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