2025
Autores
Fernandes, AL; Silvano, P; Guimarães, N; Silva, RR; Munna, TA; Cunha, LF; Leal, A; Campos, R; Jorge, A;
Publicação
Text2Story@ECIR
Abstract
Electronic Health Records (EHRs) contain vast amounts of unstructured narrative text, posing challenges for organization, curation, and automated information extraction in clinical and research settings. Developing effective annotation schemes is crucial for training extraction models, yet it remains complex for both human experts and Large Language Models (LLMs). This study compares human- and LLM-generated annotation schemes and guidelines through an experimental framework. In the first phase, both a human expert and an LLM created annotation schemes based on predefined criteria. In the second phase, experienced annotators applied these schemes following the guidelines. In both cases, the results were qualitatively evaluated using Likert scales. The findings indicate that the human-generated scheme is more comprehensive, coherent, and clear compared to those produced by the LLM. These results align with previous research suggesting that while LLMs show promising performance with respect to text annotation, the same does not apply to the development of annotation schemes, and human validation remains essential to ensure accuracy and reliability.
2025
Autores
Munna, TA; Fernandes, AL; Silvano, P; Guimarães, N; Jorge, A;
Publicação
Text2Story@ECIR
Abstract
The relationship of a patient with a hospital from admission to discharge is often kept in a series of textual documents that describe the patient’s journey. These documents are important to analyze the different steps of the clinical process and to make aggregated studies of the paths of patients in the hospital. In this paper, we explore the potential of Large Language Models (LLMs) to generate realistic and comprehensive patient journeys in European Portuguese, addressing the scarcity of medical data in this specific context. We employed Google’s Gemini 1.5 Flash model and utilized a dataset of 285 European Portuguese published case reports from the SPMI website, published by the Portuguese Society of Internal Medicine, as references for generating synthetic medical reports. Our methodology involves a sequential approach to generating a synthetic patient journey. Initially, we generate an admission report, followed by a discharge report. Subsequently, we generate a comprehensive patient journey that integrates the admission, multiple daily progress reports, and the discharge into a cohesive narrative. This end-to-end process ensures a realistic and detailed representation of the patient’s clinical pathway as a patient’s journey. The generated reports were rigorously evaluated by medical and linguistic professionals, as well as automatic metrics to measure the inclusion of key medical entities, similarity to the case report, and correct Portuguese variant. Both qualitative and quantitative evaluations confirmed that the generated synthetic reports are predominantly written in European Portuguese without the loss of important medical information from the case reports. This work contributes to developing high-quality synthetic medical data for training LLMs and advancing AI-driven healthcare applications in under-resourced language settings.
2025
Autores
Cunha, LF; Yu, N; Silvano, P; Campos, R; Jorge, A;
Publicação
ECIR (5)
Abstract
Manual text annotation is a complex and time-consuming task. However, recent advancements demonstrate that such a task can be accelerated with automated pre-annotation. In this paper, we present a methodology to improve the efficiency of manual text annotation by leveraging LLMs for text pre-annotation. For this purpose, we train a BERT model for a token classification task and integrate it into the INCEpTION annotation tool to generate span-level suggestions for human annotators. To assess the usefulness of our approach, we conducted an experiment where an experienced linguist annotated plain text both with and without our model’s pre-annotations. Our results show that the model-assisted approach reduces annotation time by nearly 23%.
2024
Autores
Piskorski, J; Stefanovitch, N; Alam, F; Campos, R; Dimitrov, D; Jorge, A; Pollak, S; Ribin, N; Fijavz, Z; Hasanain, M; Silvano, P; Sartori, E; Guimarães, N; Vitez, AZ; Pacheco, AF; Koychev, I; Yu, N; Nakov, P; San Martino, GD;
Publicação
CLEF (Working Notes)
Abstract
We present an overview of CheckThat! Lab's 2024 Task 3, which focuses on detecting 23 persuasion techniques at the text-span level in online media. The task covers five languages, namely, Arabic, Bulgarian, English, Portuguese, and Slovene, and highly-debated topics in the media, e.g., the Isreali-Palestian conflict, the Russia-Ukraine war, climate change, COVID-19, abortion, etc. A total of 23 teams registered for the task, and two of them submitted system responses which were compared against a baseline and a task organizers' system, which used a state-of-the-art transformer-based architecture. We provide a description of the dataset and the overall task setup, including the evaluation methodology, and an overview of the participating systems. The datasets accompanied with the evaluation scripts are released to the research community, which we believe will foster research on persuasion technique detection and analysis of online media content in various fields and contexts.
2024
Autores
Silvano, P; Amorim, E; Leal, A; Cantante, I; Jorge, A; Campos, R; Yu, N;
Publicação
Text2Story@ECIR
Abstract
Temporal reasoning has been the focus of several studies during the past years, both in linguistics and computational studies. Although advances on this topic are undeniable, there are still improvements to be made and new avenues to pursue. One relevant problem concerns the temporal ordering of the events, particularly asserting and representing how events are temporally related and how the story told in the narrative evolves. This paper aims to analyse the temporal structure of narratives present in news articles with the aid of different visualisations. To this end, we annotated a dataset of 119 news articles in European Portuguese following an annotation scheme that combines different parts of ISO 24617-Language Resource Management - Semantic Annotation Framework (SemAF). The temporal layer of this annotation scheme identifies the events and their main features, as well as the temporal links between the events. The annotation provided us with paramount information about the temporal characteristics of news at two levels: the story and the report levels. The visualisations that we propose facilitate the process of understanding how news are temporally organised, providing a more practical means to observe them.
2024
Autores
Cunha, LF; Silvano, P; Campos, R; Jorge, A;
Publicação
PROCEEDINGS OF THE 47TH INTERNATIONAL ACM SIGIR CONFERENCE ON RESEARCH AND DEVELOPMENT IN INFORMATION RETRIEVAL, SIGIR 2024
Abstract
Event extraction is an NLP task that commonly involves identifying the central word (trigger) for an event and its associated arguments in text. ACE-2005 is widely recognised as the standard corpus in this field. While other corpora, like PropBank, primarily focus on annotating predicate-argument structure, ACE-2005 provides comprehensive information about the overall event structure and semantics. However, its limited language coverage restricts its usability. This paper introduces ACE-2005-PT, a corpus created by translating ACE-2005 into Portuguese, with European and Brazilian variants. To speed up the process of obtaining ACE-2005-PT, we rely on automatic translators. This, however, poses some challenges related to automatically identifying the correct alignments between multi-word annotations in the original text and in the corresponding translated sentence. To achieve this, we developed an alignment pipeline that incorporates several alignment techniques: lemmatization, fuzzy matching, synonym matching, multiple translations and a BERT-based word aligner. To measure the alignment effectiveness, a subset of annotations from the ACE-2005-PT corpus was manually aligned by a linguist expert. This subset was then compared against our pipeline results which achieved exact and relaxed match scores of 70.55% and 87.55% respectively. As a result, we successfully generated a Portuguese version of the ACE-2005 corpus, which has been accepted for publication by LDC.
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