2024
Autores
Caldeira, E; Neto, PC; Gonçalves, T; Damer, N; Sequeira, AF; Cardoso, JS;
Publicação
Science Talks
Abstract
2024
Autores
Beirao, MM; Matos, J; Gon alves, T; Kase, C; Nakayama, LF; de Freitas, D; Cardoso, JS;
Publicação
2024 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE, BIBM
Abstract
Keratitis is an inflammatory corneal condition responsible for 10% of visual impairment in low- and middleincome countries (LMICs), with bacteria, fungi, or amoeba as the most common infection etiologies. While an accurate and timely diagnosis is crucial for the selected treatment and the patients' sight outcomes, due to the high cost and limited availability of laboratory diagnostics in LMICs, diagnosis is often made by clinical observation alone, despite its lower accuracy. In this study, we investigate and compare different deep learning approaches to diagnose the source of infection: 1) three separate binary models for infection type predictions; 2) a multitask model with a shared backbone and three parallel classification layers (Multitask V1); and, 3) a multitask model with a shared backbone and a multi-head classification layer (Multitask V2). We used a private Brazilian cornea dataset to conduct the empirical evaluation. We achieved the best results with Multitask V2, with an area under the receiver operating characteristic curve (AUROC) confidence intervals of 0.7413-0.7740 (bacteria), 0.83950.8725 (fungi), and 0.9448-0.9616 (amoeba). A statistical analysis of the impact of patient features on models' performance revealed that sex significantly affects amoeba infection prediction, and age seems to affect fungi and bacteria predictions.
2024
Autores
Eduard-Alexandru Bonci; Orit Kaidar-Person; Marília Antunes; Oriana Ciani; Helena Cruz; Rosa Di Micco; Oreste Davide Gentilini; Nicole Rotmensz; Pedro Gouveia; Jörg Heil; Pawel Kabata; Nuno Freitas; Tiago Gonçalves; Miguel Romariz; Helena Montenegro; Hélder P. Oliveira; Jaime S. Cardoso; Henrique Martins; Daniela Lopes; Marta Martinho; Ludovica Borsoi; Elisabetta Listorti; Carlos Mavioso; Martin Mika; André Pfob; Timo Schinköthe; Giovani Silva; Maria-Joao Cardoso;
Publicação
Cancer Research
Abstract
2024
Autores
Gonçalves, T; Arias, DP; Willett, J; Hoebel, KV; Cleveland, MC; Ahmed, SR; Gerstner, ER; Cramer, JK; Cardoso, JS; Bridge, CP; Kim, AE;
Publicação
CoRR
Abstract
2024
Autores
Pereira, C; Cruz, RPM; Fernandes, JND; Pinto, JR; Cardoso, JS;
Publicação
IEEE Trans. Intell. Veh.
Abstract
2024
Autores
Freitas, N; Montenegro, H; Cardoso, MJ; Cardoso, JS;
Publicação
IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING, ISBI 2024
Abstract
Breast cancer locoregional treatment causes alterations to the physical aspect of the breast, often negatively impacting the self-esteem of patients unaware of the possible aesthetic outcomes of those treatments. To improve patients' self-esteem and enable a more informed choice of treatment when multiple options are available, the possibility to predict how the patient might look like after surgery would be of invaluable help. However, no work has been proposed to predict the aesthetic outcomes of breast cancer treatment. As a first step, we compare traditional computer vision and deep learning approaches to reproduce asymmetries of post-operative patients on pre-operative breast images. The results suggest that the traditional approach is better at altering the contour of the breast. In contrast, the deep learning approach succeeds in realistically altering the position and direction of the nipple.
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