2018
Autores
Coelho, P; Pereira, A; Leite, A; Salgado, M; Cunha, A;
Publicação
IMAGE ANALYSIS AND RECOGNITION (ICIAR 2018)
Abstract
The wireless capsule endoscopy has revolutionized early diagnosis of small bowel diseases. However, a single examination has up to 10 h of video and requires between 30–120 min to read. Computational methods are needed to increase both efficiency and accuracy of the diagnosis. In this paper, an evaluation of deep learning U-Net architecture is presented, to detect and segment red lesions in the small bowel. Its results were compared with those obtained from the literature review. To make the evaluation closer to those used in clinical environments, the U-Net was also evaluated in an annotated sequence by using the Suspected Blood Indicator tool (SBI). Results found that detection and segmentation using U-Net outperformed both the algorithms used in the literature review and the SBI tool. © 2018, Springer International Publishing AG, part of Springer Nature.
2018
Autores
Adáo, T; Pádua, L; Hruška, J; Marques, P; Peres, E; Sousa, JJ; Cunha, A; Sousa, AMR; Morais, R;
Publicação
ICGDA
Abstract
Vineyard parcels delimitation is a preliminary but important task to support zoning activities, which can be burdensome and time-consuming when manually performed. In spite of being desirable to overcome such issue, the implementation of a semi-/fully automatic delimitation approach can meet serious development challenges when dealing with vineyards like the ones that prevail in Douro Region (north-east of Portugal), mainly due to the great diversity of parcel/row formats and several factors that can hamper detection as, for example, interrupted rows and inter-row vegetation. Thereby, with the aim of addressing vineyard parcels detection and delimitation in Douro Region, a preliminary method based on segmentation and morphological operations upon high-resolution aerial imagery is proposed. This method was tested in a data set collected from vineyards located at the University of Trás-os-Montes and Alto Douro(Vila Real, Portugal). The presence of some of the previously mentioned challenging conditions - namely interrupted rows and inter-row grassing - in a few parcels contributed to lower the overall detection accuracy, pointing out the need for future improvements. Notwithstanding, encouraging preliminary results were achieved.
2018
Autores
Aresta, G; Araújo, T; Jacobs, C; van Ginneken, B; Cunha, A; Ramos, I; Campilho, A;
Publicação
IMAGE ANALYSIS FOR MOVING ORGAN, BREAST, AND THORACIC IMAGES
Abstract
We propose a deep learning-based pipeline that, given a low-dose computed tomography of a patient chest, recommends if a patient should be submitted to further lung cancer assessment. The algorithm is composed of a nodule detection block that uses the object detection framework YOLOv2, followed by a U-Net based segmentation. The found structures of interest are then characterized in terms of diameter and texture to produce a final referral recommendation according to the National Lung Screen Trial (NLST) criteria. Our method is trained using the public LUNA16 and LIDC-IDRI datasets and tested on an independent dataset composed of 500 scans from the Kaggle DSB 2017 challenge. The proposed system achieves a patient-wise recall of 89% while providing an explanation to the referral decision and thus may serve as a second opinion tool to speed-up and improve lung cancer screening.
2018
Autores
Ferreira, CA; Cunha, A; Mendonça, AM; Campilho, A;
Publicação
CIARP
Abstract
Lung cancer is one of the most common causes of death in the world. The early detection of lung nodules allows an appropriate follow-up, timely treatment and potentially can avoid greater damage in the patient health. The texture is one of the nodule characteristics that is correlated with the malignancy. We developed convolutional neural network architectures to classify automatically the texture of nodules into the non-solid, part-solid and solid classes. The different architectures were tested to determine if the context, the number of slices considered as input and the relation between slices influence on the texture classification performance. The architecture that obtained better performance took into account different scales, different rotations and the context of the nodule, obtaining an accuracy of 0.833 ± 0.041.
2018
Autores
Pinheiro, G; Coelho, P; Salgado, M; Oliveira, HP; Cunha, A;
Publicação
PROCEEDINGS 2018 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM)
Abstract
Endoscopic capsules are vitamin-sized devices that create 8 to 10 hour videos of the digestive tract. They are the leading diagnosing method for the small bowel, a region not easily accessible with traditional endoscopy techniques. However, these capsules do not provide localization information, even though it is crucial for the diagnosis, follow-ups and surgical interventions. Currently, the capsule localization is either estimated based on scarce gastrointestinal tract landmarks or given by additional hardware that causes discomfort to the patient and represents a cost increase. Current software methods show great potential, but still need to improve in order to overcome their limitations. In this work, a visual odometry method for capsule localization inside the small bowel is proposed.
2018
Autores
Machado, M; Aresta, G; Leitao, P; Carvalho, AS; Rodrigues, M; Ramos, I; Cunha, A; Campilho, A;
Publicação
2018 1ST INTERNATIONAL CONFERENCE ON GRAPHICS AND INTERACTION (ICGI 2018)
Abstract
Lung cancer diagnosis is made by radiologists through nodule search in chest Computed Tomography (CT) scans. This task is known to be difficult and prone to errors that can lead to late diagnosis. Although Computer-Aided Diagnostic (CAD) systems are promising tools to be used in clinical practice, experienced radiologists continue to perform better diagnosis than CADs. This paper proposes a methodology for characterizing the radiologist's gaze during nodules search in chest CT scans. The main goals are to identify regions that attract the radiologists' attention, which can then be used for improving a lung CAD system, and to create a tool to assist radiologists during the search task. For that purpose, the methodology processes the radiologists' gaze and their mouse coordinates during the nodule search. The resulting data is then processed to obtain a 3D gaze path from which relevant attention studies can be derived. To better convey the found information, a reference model of the lung that eases the communication of the location of relevant anatomical/pathological findings is also proposed. The methodology is tested on a set of 24 real-practice gazes, recorded via an Eye tracker, from 3 radiologists.
The access to the final selection minute is only available to applicants.
Please check the confirmation e-mail of your application to obtain the access code.