2025
Autores
Guilherme G. S. Nunes; João D. S. Almeida; Darlan B. P. Quitanilha; António Cunha;
Publicação
Anais do XXV Simpósio Brasileiro de Computação Aplicada à Saúde (SBCAS 2025)
Abstract
2025
Autores
Antunes, C; Rodrigues, JMF; Cunha, A;
Publicação
APPLIED SCIENCES-BASEL
Abstract
Pneumonia is a respiratory condition caused by various microorganisms, including bacteria, viruses, fungi, and parasites. It manifests with symptoms such as coughing, chest pain, fever, breathing difficulties, and fatigue. Early and accurate detection is crucial for effective treatment, yet traditional diagnostic methods often fall short in reliability and speed. Chest X-rays have become widely used for detecting pneumonia; however, current approaches still struggle with achieving high accuracy and interpretability, leaving room for improvement. PneumoNet, an artificial intelligence assistant for X-ray pneumonia detection, is proposed in this work. The framework comprises (a) a new deep learning-based classification model for the detection of pneumonia, which expands on the AlexNet backbone for feature extraction in X-ray images and a new head in its final layers that is tailored for (X-ray) pneumonia classification. (b) GPT-Neo, a large language model, which is used to integrate the results and produce medical reports. The classification model is trained and evaluated on three publicly available datasets to ensure robustness and generalisability. Using multiple datasets mitigates biases from single-source data, addresses variations in patient demographics, and allows for meaningful performance comparisons with prior research. PneumoNet classifier achieves accuracy rates between 96.70% and 98.70% in those datasets.
2025
Autores
Machado, J; Marta, A; Mestre, P; Beirao, JM; Cunha, A;
Publicação
APPLIED SCIENCES-BASEL
Abstract
Inherited retinal diseases (IRDs) are rare and genetically diverse disorders that cause progressive vision loss and affect 1 in 3000 individuals worldwide. Their rarity and genetic variability pose a challenge for deep learning models due to the limited amount of data. Generative models offer a promising solution by creating synthetic data to improve training datasets. This study carried out a systematic literature review to investigate the use of generative models to augment data in IRDs and assess their impact on the performance of classifiers for these diseases. Following PRISMA 2020 guidelines, searches in four databases identified 32 relevant studies, 2 focused on IRD and the rest on other retinal diseases. The results indicate that generative models effectively augment small datasets. Among the techniques identified, Deep Convolutional Adversarial Generative Networks (DCGAN) and the Style-Based Generator Architecture of Generative Adversarial Networks 2 (StyleGAN2) were the most widely used. These architectures generated highly realistic and diverse synthetic data, often indistinguishable from real data, even for experts. The results highlight the need for more research into data generation in IRD to develop robust diagnostic tools and improve genetic studies by creating more comprehensive genetic repositories.
2025
Autores
Carneiro, GA; Aubry, TJ; Cunha, A; Radeva, P; Sousa, JJ;
Publicação
COMPUTERS AND ELECTRONICS IN AGRICULTURE
Abstract
Precision Agriculture (PA) has emerged as an approach to optimize production, comprise different technology and principles focusing on how to improve agricultural production. Currently, one of the main foundations of PA is the use of artificial intelligence, through deep learning (DL) algorithms. By processing large volumes of complex data, DL enhances decision-making and boosts farming efficiency. However, these methods are hungry for annotated data, which contrasts with the scarce availability of annotated agricultural data and the costs of annotation. Self-supervised learning (SSL) has emerged as a solution to tackle the lack of annotated agricultural data. This study presents a review of the application of SSL methods to computer vision tasks in the agricultural context. The aim is to create a starting point for professionals and scientists who intend to apply these methods using agricultural data. The results of 33 studies found in the literature are discussed, highlighting their pros and cons. In most of the studies, SSL outperformed its supervised counterpart, using datasets from 4000 to 60,000 samples. Potential directions for improving future research are suggested.
2025
Autores
Ferreira, H; Marta, A; Machado, J; Couto, I; Marques, JP; Beirao, JM; Cunha, A;
Publicação
APPLIED SCIENCES-BASEL
Abstract
Inherited retinal diseases (IRDs) are genetic disorders affecting photoreceptors and the retinal pigment epithelium, leading to progressive vision loss. Retinitis pigmentosa (RP), the most common IRD, manifests as night blindness, peripheral vision loss, and eventually central vision decline. RP is genetically diverse and can be categorized into non-syndromic and syndromic. Advanced imaging technologies such as fundus autofluorescence (FAF) and spectral-domain optical coherence tomography (SD-OCT) facilitate diagnosing and managing these conditions. The integration of artificial intelligence in analyzing retinal images has shown promise in identifying genes associated with RP. This study used a dataset from Portuguese public hospitals, comprising 2798 FAF images labeled for syndromic and non-syndromic RP across 66 genes. Three pre-trained models, Inception-v3, ResNet-50, and VGG-19, were used to classify these images, obtaining an accuracy of over 80% in the training data and 54%, 56%, and 54% in the test data for all models. Data preprocessing included class balancing and boosting to address variability in gene representation. Model performance was evaluated using some main metrics. The findings demonstrate the effectiveness of deep learning in automatically classifying retinal images for different RP-associated genes, marking a significant advancement in the diagnostic capabilities of artificial intelligence and advanced imaging techniques in IRD.
2025
Autores
Antunes, C; Rodrigues, J; Cunha, A;
Publicação
Intelligence-Based Medicine
Abstract
COVID-19 is an extremely contagious respiratory sickness instigated by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Common symptoms encompass fever, cough, fatigue, and breathing difficulties, often leading to hospitalization and fatalities in severe cases. CTCovid19 is a novel model tailored for COVID-19 detection, specifically honing in on a distinct deep learning structure, ResNet-50 trained with ImageNet serves as the foundational framework for our model. To enhance its capability to capture pertinent features related to COVID-19 patterns in Computed Tomography scans, the network underwent fine-tuning through layer adjustments and the addition of new ones. The model achieved accuracy rates that went from 97.0 % to 99.8 % across three widely recognized and documented datasets dedicated to COVID-19 detection. © 2024 The Authors
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