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Publicações

Publicações por Mafalda Reis Pereira

2018

Comparison of pollen quality in Vitis vinifera L. cultivars

Autores
Pereira, MR; Ribeiro, H; Cunha, M; Abreu, I;

Publicação
SCIENTIA HORTICULTURAE

Abstract
Pollen quality of 15 cultivars of Vitis vinifera L. was studied in this work. Pollen viability was tested by the fluorochromatic reaction and germination was analyzed by in vitro assays, using two different media. Differences among cultivars in the number of pollen apertures were observed under light microscope. All the cultivars studied showed a higher percentage of tricolporated pollen, however, pollen grains containing one, two or four apertures were also observed. The cultivar Loureiro was the one with the higher percentage of pollen grains with four apertures (3.8%) and Touriga Nacional presented 100% of tricolporated pollen grains. The viability analysis showed that 13 cultivars presented values higher than 50%, with 8 cultivars reaching values above 75%. The pollen germination rates vary greatly for the grapevine cultivars studied, three cultivars show low values of germination (under 14%) in the two media tested, which were Touriga Nacional, Cabernet Franc, and Cabernet Sauvignon while others presented high values of germination like Casteldo, Loureiro, Malbec and Petit Verdot. No significant statistical differences between the percentages of germination in the two media studied were found for the majority of cultivars analyzed.

2018

Predicting the flowering date of Portuguese grapevine varieties using temperature-based phenological models: a multi-site approach

Autores
Pereira, MR; Ribeiro, H; Abreu, I; Eiras Dias, J; Mota, T; Cunha, M;

Publicação
JOURNAL OF AGRICULTURAL SCIENCE

Abstract
Phenological models for predicting the grapevine flowering were tested using phenological data of 15 grape varieties collected between 1990 and 2014 in Vinhos Verdes and Lisbon Portuguese wine regions. Three models were tested: Spring Warming (Growing Degree Days - GDD model), Spring Warming modified using a triangular function - GDD triangular and UniFORC model, which considers an exponential response curve to temperature. Model estimation was performed using data on two grape varieties (Loureiro and Fernao Pires), present in both regions. Three dates were tested for the beginning of heat unit accumulation (t(0)( )date): budburst, 1 January and 1 September. The best overall date was budburst. Furthermore, for each model parameter, an intermediate range of values common for the studied regions was estimated and further optimized to obtain one model that could he used for a diverse range of grape varieties in both wine regions. External validation was performed using an independent data set from 13 grape varieties (seven red and six white), different from the two used in the estimation step. The results showed a high coefficient of determination (R-2 : 0.59-0.89), low Root Mean Square Error (RMSE: 3-7 days) and Mean Absolute Deviation (MAD: 2-6 days) between predicted and observed values. The UniFORC model overall performed slightly better than the two GDD models, presenting higher R-2 (0.75) and lower RMSE (4.55) and MAD (3.60). The developed phenological models presented good accuracy when applied to several varieties in different regions and can be used as a predictor tool of flowering date in Portugal.

2022

Kiwi Plant Canker Diagnosis Using Hyperspectral Signal Processing and Machine Learning: Detecting Symptoms Caused by Pseudomonas syringae pv. actinidiae

Autores
Reis Pereira, M; Tosin, R; Martins, R; dos Santos, FN; Tavares, F; Cunha, M;

Publicação
PLANTS-BASEL

Abstract
Pseudomonas syringae pv. actinidiae (Psa) has been responsible for numerous epidemics of bacterial canker of kiwi (BCK), resulting in high losses in kiwi production worldwide. Current diagnostic approaches for this disease usually depend on visible signs of the infection (disease symptoms) to be present. Since these symptoms frequently manifest themselves in the middle to late stages of the infection process, the effectiveness of phytosanitary measures can be compromised. Hyperspectral spectroscopy has the potential to be an effective, non-invasive, rapid, cost-effective, high-throughput approach for improving BCK diagnostics. This study aimed to investigate the potential of hyperspectral UV-VIS reflectance for in-situ, non-destructive discrimination of bacterial canker on kiwi leaves. Spectral reflectance (325-1075 nm) of twenty plants were obtained with a handheld spectroradiometer in two commercial kiwi orchards located in Portugal, for 15 weeks, totaling 504 spectral measurements. Several modeling approaches based on continuous hyperspectral data or specific wavelengths, chosen by different feature selection algorithms, were tested to discriminate BCK on leaves. Spectral separability of asymptomatic and symptomatic leaves was observed in all multi-variate and machine learning models, including the FDA, GLM, PLS, and SVM methods. The combination of a stepwise forward variable selection approach using a support vector machine algorithm with a radial kernel and class weights was selected as the final model. Its overall accuracy was 85%, with a 0.70 kappa score and 0.84 F-measure. These results were coherent with leaves classified as asymptomatic or symptomatic by visual inspection. Overall, the findings herein reported support the implementation of spectral point measurements acquired in situ for crop disease diagnosis.

2023

Enhancing host-pathogen phenotyping dynamics: early detection of tomato bacterial diseases using hyperspectral point measurement and predictive modeling

Autores
Pereira, MR; dos Santos, FN; Tavares, F; Cunha, M;

Publicação
FRONTIERS IN PLANT SCIENCE

Abstract
Early diagnosis of plant diseases is needed to promote sustainable plant protection strategies. Applied predictive modeling over hyperspectral spectroscopy (HS) data can be an effective, fast, cost-effective approach for improving plant disease diagnosis. This study aimed to investigate the potential of HS point-of-measurement (POM) data for in-situ, non-destructive diagnosis of tomato bacterial speck caused by Pseudomonas syringae pv. tomato (Pst), and bacterial spot, caused by Xanthomonas euvesicatoria (Xeu), on leaves (cv. cherry). Bacterial artificial infection was performed on tomato plants at the same phenological stage. A sensing system composed by a hyperspectral spectrometer, a transmission optical fiber bundle with a slitted probe and a white light source were used for spectral data acquisition, allowing the assessment of 3478 spectral points. An applied predictive classification model was developed, consisting of a normalizing pre-processing strategy allied with a Linear Discriminant Analysis (LDA) for reducing data dimensionality and a supervised machine learning algorithm (Support Vector Machine - SVM) for the classification task. The predicted model achieved classification accuracies of 100% and 74% for Pst and Xeu test set assessments, respectively, before symptom appearance. Model predictions were coherent with host-pathogen interactions mentioned in the literature (e.g., changes in photosynthetic pigment levels, production of bacterial-specific molecules, and activation of plants' defense mechanisms). Furthermore, these results were coherent with visual phenotyping inspection and PCR results. The reported outcomes support the application of spectral point measurements acquired in-vivo for plant disease diagnosis, aiming for more precise and eco-friendly phytosanitary approaches.