2022
Autores
Pinto, H; Pernice, R; Silva, ME; Javorka, M; Faes, L; Rocha, AP;
Publicação
PHYSIOLOGICAL MEASUREMENT
Abstract
Objective. In this work, an analytical framework for the multiscale analysis of multivariate Gaussian processes is presented, whereby the computation of Partial Information Decomposition measures is achieved accounting for the simultaneous presence of short-term dynamics and long-range correlations. Approach. We consider physiological time series mapping the activity of the cardiac, vascular and respiratory systems in the field of Network Physiology. In this context, the multiscale representation of transfer entropy within the network of interactions among Systolic arterial pressure (S), respiration (R) and heart period (H), as well as the decomposition into unique, redundant and synergistic contributions, is obtained using a Vector AutoRegressive Fractionally Integrated (VARFI) framework for Gaussian processes. This novel approach allows to quantify the directed information flow accounting for the simultaneous presence of short-term dynamics and long-range correlations among the analyzed processes. Additionally, it provides analytical expressions for the computation of the information measures, by exploiting the theory of state space models. The approach is first illustrated in simulated VARFI processes and then applied to H, S and R time series measured in healthy subjects monitored at rest and during mental and postural stress. Main Results. We demonstrate the ability of the VARFI modeling approach to account for the coexistence of short-term and long-range correlations in the study of multivariate processes. Physiologically, we show that postural stress induces larger redundant and synergistic effects from S and R to H at short time scales, while mental stress induces larger information transfer from S to H at longer time scales, thus evidencing the different nature of the two stressors. Significance. The proposed methodology allows to extract useful information about the dependence of the information transfer on the balance between short-term and long-range correlations in coupled dynamical systems, which cannot be observed using standard methods that do not consider long-range correlations.
2022
Autores
Silva, VF; Silva, ME; Ribeiro, P; Silva, F;
Publicação
DATA MINING AND KNOWLEDGE DISCOVERY
Abstract
Being able to capture the characteristics of a time series with a feature vector is a very important task with a multitude of applications, such as classification, clustering or forecasting. Usually, the features are obtained from linear and nonlinear time series measures, that may present several data related drawbacks. In this work we introduce NetF as an alternative set of features, incorporating several representative topological measures of different complex networks mappings of the time series. Our approach does not require data preprocessing and is applicable regardless of any data characteristics. Exploring our novel feature vector, we are able to connect mapped network features to properties inherent in diversified time series models, showing that NetF can be useful to characterize time data. Furthermore, we also demonstrate the applicability of our methodology in clustering synthetic and benchmark time series sets, comparing its performance with more conventional features, showcasing how NetF can achieve high-accuracy clusters. Our results are very promising, with network features from different mapping methods capturing different properties of the time series, adding a different and rich feature set to the literature.
2022
Autores
Sousa, R; Pereira, I; Silva, ME;
Publicação
RECENT DEVELOPMENTS IN STATISTICS AND DATA SCIENCE, SPE2021
Abstract
Often, real-life problems require modelling several response variables together. This work analyses a multivariate linear regression model when the data are censored. Censoring distorts the correlation structure of the underlying variables and increases the bias of the usual estimators. Thus, we propose three methods to deal with multivariate data under left censoring, namely Expectation Maximization (EM), DataAugmentation (DA) and Gibbs Sampler with Data Augmentation (GDA). Results from a simulation study showthat both DA and GDA estimates are consistent for low and moderate correlation. Under high correlation scenarios, EM estimates present a lower bias.
2022
Autores
Silva, ME; Campos, P;
Publicação
Proceedings of the IASE 2021 Satellite Conference
Abstract
2022
Autores
Reyes, M; Abreu, PH; Cardoso, JS;
Publicação
iMIMIC@MICCAI
Abstract
2022
Autores
Santos, MS; Abreu, PH; Fernandez, A; Luengo, J; Santos, J;
Publicação
ENGINEERING APPLICATIONS OF ARTIFICIAL INTELLIGENCE
Abstract
This work performs an in-depth study of the impact of distance functions on K-Nearest Neighbours imputation of heterogeneous datasets. Missing data is generated at several percentages, on a large benchmark of 150 datasets (50 continuous, 50 categorical and 50 heterogeneous datasets) and data imputation is performed using different distance functions (HEOM, HEOM-R, HVDM, HVDM-R, HVDM-S, MDE and SIMDIST) and k values (1, 3, 5 and 7). The impact of distance functions on kNN imputation is then evaluated in terms of classification performance, through the analysis of a classifier learned from the imputed data, and in terms of imputation quality, where the quality of the reconstruction of the original values is assessed. By analysing the properties of heterogeneous distance functions over continuous and categorical datasets individually, we then study their behaviour over heterogeneous data. We discuss whether datasets with different natures may benefit from different distance functions and to what extent the component of a distance function that deals with missing values influences such choice. Our experiments show that missing data has a significant impact on distance computation and the obtained results provide guidelines on how to choose appropriate distance functions depending on data characteristics (continuous, categorical or heterogeneous datasets) and the objective of the study (classification or imputation tasks).
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