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Publicações

Publicações por CTM

2023

Unimodal Distributions for Ordinal Regression

Autores
Cardoso, JS; Cruz, RPM; Albuquerque, T;

Publicação
CoRR

Abstract
In many real-world prediction tasks, the class labels contain information about the relative order between the labels that are not captured by commonly used loss functions such as multicategory cross-entropy. In ordinal regression, many works have incorporated ordinality into models and loss functions by promoting unimodality of the probability output. However, current approaches are based on heuristics, particularly non-parametric ones, which are still insufficiently explored in the literature. We analyze the set of unimodal distributions in the probability simplex, establishing fundamental properties and giving new perspectives to understand the ordinal regression problem. Two contributions are then proposed to incorporate the preference for unimodal distributions into the predictive model: 1) UnimodalNet, a new architecture that by construction ensures the output is a unimodal distribution, and 2) Wasserstein Regularization, a new loss term that relies on the notion of projection in a set to promote unimodality. Experiments show that the new architecture achieves top performance, while the proposed new loss term is very competitive while maintaining high unimodality.

2023

CoNIC Challenge: Pushing the Frontiers of Nuclear Detection, Segmentation, Classification and Counting

Autores
Graham, S; Vu, QD; Jahanifar, M; Weigert, M; Schmidt, U; Zhang, W; Zhang, J; Yang, S; Xiang, J; Wang, X; Rumberger, JL; Baumann, E; Hirsch, P; Liu, L; Hong, C; Avilés Rivero, AI; Jain, A; Ahn, H; Hong, Y; Azzuni, H; Xu, M; Yaqub, M; Blache, MC; Piégu, B; Vernay, B; Scherr, T; Böhland, M; Löffler, K; Li, J; Ying, W; Wang, C; Kainmueller, D; Schönlieb, CB; Liu, S; Talsania, D; Meda, Y; Mishra, P; Ridzuan, M; Neumann, O; Schilling, MP; Reischl, M; Mikut, R; Huang, B; Chien, HC; Wang, CP; Lee, CY; Lin, HK; Liu, Z; Pan, X; Han, C; Cheng, J; Dawood, M; Deshpande, S; Saad Bashir, RM; Shephard, A; Costa, P; Nunes, JD; Campilho, A; Cardoso, JS; S, HP; Puthussery, D; G, DR; V, JC; Zhang, Y; Fang, Z; Lin, Z; Zhang, Y; Lin, C; Zhang, L; Mao, L; Wu, M; Vi Vo, TT; Kim, SH; Lee, T; Kondo, S; Kasai, S; Dumbhare, P; Phuse, V; Dubey, Y; Jamthikar, A; Le Vuong, TT; Kwak, JT; Ziaei, D; Jung, H; Miao, T; Snead, DRJ; Ahmed Raza, SE; Minhas, F; Rajpoot, NM;

Publicação
CoRR

Abstract

2023

A CAD System for Colorectal Cancer from WSI: A Clinically Validated Interpretable ML-based Prototype

Autores
Neto, PC; Montezuma, D; de Oliveira, SP; Oliveira, D; Fraga, J; Monteiro, A; Monteiro, JC; Ribeiro, L; Gonçalves, S; Reinhard, S; Zlobec, I; Pinto, IM; Cardoso, JS;

Publicação
CoRR

Abstract

2023

PIC-Score: Probabilistic Interpretable Comparison Score for Optimal Matching Confidence in Single- and Multi-Biometric Face Recognition

Autores
Neto, PC; Sequeira, AF; Cardoso, JS; Terhörst, P;

Publicação
IEEE/CVF Conference on Computer Vision and Pattern Recognition, CVPR 2023 - Workshops, Vancouver, BC, Canada, June 17-24, 2023

Abstract
In the context of biometrics, matching confidence refers to the confidence that a given matching decision is correct. Since many biometric systems operate in critical decision-making processes, such as in forensics investigations, accurately and reliably stating the matching confidence becomes of high importance. Previous works on biometric confidence estimation can well differentiate between high and low confidence, but lack interpretability. Therefore, they do not provide accurate probabilistic estimates of the correctness of a decision. In this work, we propose a probabilistic interpretable comparison (PIC) score that accurately reflects the probability that the score originates from samples of the same identity. We prove that the proposed approach provides optimal matching confidence. Contrary to other approaches, it can also optimally combine multiple samples in a joint PIC score which further increases the recognition and confidence estimation performance. In the experiments, the proposed PIC approach is compared against all biometric confidence estimation methods available on four publicly available databases and five state-of-the-art face recognition systems. The results demonstrate that PIC has a significantly more accurate probabilistic interpretation than similar approaches and is highly effective for multi-biometric recognition. The code is publicly-available1. © 2023 IEEE.

2023

Evaluation of Vectra® XT 3D Surface Imaging Technology in Measuring Breast Symmetry and Breast Volume

Autores
Pham, M; Alzul, R; Elder, E; French, J; Cardoso, J; Kaviani, A; Meybodi, F;

Publicação
AESTHETIC PLASTIC SURGERY

Abstract
Background Breast symmetry is an essential component of breast cosmesis. The Harvard Cosmesis scale is the most widely adopted method of breast symmetry assessment. However, this scale lacks reproducibility and reliability, limiting its application in clinical practice. The VECTRA (R) XT 3D (VECTRA (R)) is a novel breast surface imaging system that, when combined with breast contour measuring software (Mirror (R)), aims to produce a more accurate and reproducible measurement of breast contour to aid operative planning in breast surgery. Objectives This study aims to compare the reliability and reproducibility of subjective (Harvard Cosmesis scale) with objective (VECTRA (R)) symmetry assessment on the same cohort of patients. Methods Patients at a tertiary institution had 2D and 3D photographs of their breasts. Seven assessors scored the 2D photographs using the Harvard Cosmesis scale. Two independent assessors used Mirror (R) software to objectively calculate breast symmetry by analysing 3D images of the breasts. Results Intra-observer agreement ranged from none to moderate (kappa - 0.005-0.7) amongst the assessors using the Harvard Cosmesis scale. Inter-observer agreement was weak (kappa 0.078-0.454) amongst Harvard scores compared to VECTRA (R) measurements. Kappa values ranged 0.537-0.674 for intra-observer agreement (p < 0.001) with Root Mean Square (RMS) scores. RMS had a moderate correlation with the Harvard Cosmesis scale (r(s) = 0.613). Furthermore, absolute volume difference between breasts had poor correlation with RMS (R-2 = 0.133). Conclusion VECTRA (R) and Mirror (R) software have potential in clinical practice as objectifying breast symmetry, but in the current form, it is not an ideal test.

2023

BOLD: Blood-gas and Oximetry Linked Dataset - Open Source Research

Autores
Matos, J; Struja, T; Gallifant, J; Nakayama, LF; Charpignon, M; Liu, X; Economou-Zavlanos, N; Cardoso, JS; Johnson, KS; Bhavsar, N; Gichoya, JW; Celi, LA; Wong, AI;

Publicação

Abstract
Pulse oximeters measure peripheral arterial oxygen saturation (SpO2) noninvasively, while the gold standard (SaO2) involves arterial blood gas measurement. There are known racial and ethnic disparities in their performance. BOLD is a new comprehensive dataset that aims to underscore the importance of addressing biases in pulse oximetry accuracy, which disproportionately affect darker-skinned patients. The dataset was created by harmonizing three Electronic Health Record databases (MIMIC-III, MIMIC-IV, eICU-CRD) comprising Intensive Care Unit stays of US patients. Paired SpO2 and SaO2 measurements were time-aligned and combined with various other sociodemographic and parameters to provide a detailed representation of each patient. BOLD includes 49,099 paired measurements, within a 5-minute window and with oxygen saturation levels between 70-100%. Minority racial and ethnic groups account for ~25% of the data - a proportion seldom achieved in previous studies. The codebase is publicly available. Given the prevalent use of pulse oximeters in the hospital and at home, we hope that BOLD will be leveraged to develop debiasing algorithms that can result in more equitable healthcare solutions.

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