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Publicações

Publicações por CTM

2017

Glucose diffusion in colorectal mucosa-a comparative study between normal and cancer tissues

Autores
Carvalho, S; Gueiral, N; Nogueira, E; Henrique, R; Oliveira, L; Tuchin, VV;

Publicação
JOURNAL OF BIOMEDICAL OPTICS

Abstract
Colorectal carcinoma is a major health concern worldwide and its high incidence and mortality require accurate screening methods. Following endoscopic examination, polyps must be removed for histopathological characterization. Aiming to contribute to the improvement of current endoscopy methods of colorectal carcinoma screening or even for future development of laser treatment procedures, we studied the diffusion properties of glucose and water in colorectal healthy and pathological mucosa. These parameters characterize the tissue dehydration and the refractive index matching mechanisms of optical clearing (OC). We used ex vivo tissues to measure the collimated transmittance spectra and thickness during treatments with OC solutions containing glucose in different concentrations. These time dependencies allowed for estimating the diffusion time and diffusion coefficient values of glucose and water in both types of tissues. The measured diffusion times for glucose in healthy and pathological mucosa samples were 299.2 +/- 4.7 s and 320.6 +/- 10.6 s for 40% and 35% glucose concentrations, respectively. Such a difference indicates a slower glucose diffusion in cancer tissues, which originate from their ability to trap far more glucose than healthy tissues. We have also found a higher free water content in cancerous tissue that is estimated as 64.4% instead of 59.4% for healthy mucosa. (C) 2017 Society of Photo-Optical Instrumentation Engineers (SPIE)

2017

Simple multimodal optical technique for evaluation of free/bound water and dispersion of human liver tissue

Autores
Carneiro, I; Carvalho, S; Henrique, R; Oliveira, L; Tuchin, VV;

Publicação
JOURNAL OF BIOMEDICAL OPTICS

Abstract
The optical dispersion and water content of human liver were experimentally studied to estimate the optical dispersions of tissue scatterers and dry matter. Using temporal measurements of collimated transmittance [T-c(t)] of liver samples under treatment at different glycerol concentrations, free water and diffusion coefficient (D-gl) of glycerol in liver were found as 60.0% and 8.2 x 10(-7) cm(2)/s, respectively. Bound water was calculated as the difference between the reported total water of 74.5% and found free water. The optical dispersion of liver was calculated from the measurements of refractive index (Rl) of tissue samples made for different wavelengths between 400 and 1000 nm. Using liver and water optical dispersions at 20 degrees C and the free and total water, the dispersions for liver scatterers and dry matter were calculated. The estimated dispersions present a decreasing behavior with wavelength. The dry matter dispersion shows higher Rl values than liver scatterers, as expected. Considering 600 nm, dry matter has an Rl of 1.508, whereas scatterers have an Rl of 1.444. These dispersions are useful to characterize the Rl matching mechanism in optical clearing treatments, provided that [T-c(t)] and thickness measurements are performed during treatment. The knowledge of D-gl is also important for living tissue cryoprotection applications. (C) 2017 Society of Photo-Optical Instrumentation Engineers (SPIE)

2017

Improving diagnosis in Obstructive Sleep Apnea with clinical data: a Bayesian network approach

Autores
Ferreira Santos, D; Rodrigues, PP;

Publicação
2017 IEEE 30TH INTERNATIONAL SYMPOSIUM ON COMPUTER-BASED MEDICAL SYSTEMS (CBMS)

Abstract
In obstructive sleep apnea, respiratory effort is maintained but ventilation decreases/disappears because of the partial/total occlusion in the upper airway. It affects about 4% of men and 2% of women in the world population. The aim was to define an auxiliary diagnostic method that can support the decision to perform polysomnography (standard test), based on risk and diagnostic factors. Our sample performed polysomnography between January and May 2015. Two Bayesian classifiers were used to build the models: Naive Bayes (NB) and Tree augmented Naive Bayes (TAN), using all 39 variables or just a selection of 13. Area under the ROC curve, sensitivity, specificity, predictive values were evaluated using cross-validation. From a collected total of 241 patients, only 194 fulfill the inclusion criteria. 123 (63%) were male, with a mean age of 58 years old. 66 (34%) patients had a normal result and 128 (66%) a diagnostic of obstructive sleep apnea. The AUCs for each model were: NB39 - 72%; TAN39 - 79%; NB13 - 75% and TAN13 - 75%. The high (34%) proportion of normal results confirm the need for a pre-evaluation prior to polysomnography. The constant seeking of a validated model to screen patients with suspicion of obstructive sleep apnea is essential, especially at the level of primary care.

2017

Implementing Guidelines for Causality Assessment of Adverse Drug Reaction Reports: A Bayesian Network Approach

Autores
Rodrigues, PP; Santos, DF; Silva, A; Polónia, J; Vaz, IR;

Publicação
Artificial Intelligence in Medicine - 16th Conference on Artificial Intelligence in Medicine, AIME 2017, Vienna, Austria, June 21-24, 2017, Proceedings

Abstract
In pharmacovigilance, reported cases are considered suspected adverse drug reactions (ADR). Health authorities have thus adopted structured causality assessment methods, allowing the evaluation of the likelihood that a medicine was the causal agent of an adverse reaction. The aim of this work was to develop and validate a new causality assessment support system used in a regional pharmacovigilance centre. A Bayesian network was developed, for which the structure was defined by an expert, aiming at implementing the current guidelines for causality assessment, while the parameters were learnt from 593 completely-filled ADR reports evaluated by the Portuguese Northern Pharmacovigilance Centre expert between 2000 and 2012. Precision, recall and time to causality assessment (TTA) was evaluated, according to the WHO causality assessment guidelines, in a retrospective cohort of 466 reports (April to September 2014) and a prospective cohort of 1041 reports (January to December 2015). Results show that the network was able to easily identify the higher levels of causality (recall above 80%), although strugling to assess reports with a lower level of causality. Nonetheless, the median (Q1:Q3) TTA was 4 (2:8) days using the network and 8 (5:14) days using global introspection, meaning the network allowed a faster time to assessment, which has a procedural deadline of 30 days, improving daily activities in the centre.

2017

The 2008 outburst in the young stellar system Z CMa III. Multi-epoch high-angular resolution images and spectra of the components in near-infrared

Autores
Bonnefoy, M; Chauvin, G; Dougados, C; Kospal, A; Benisty, M; Duchene, G; Bouvier, J; Garcia, PJV; Whelan, E; Antoniucci, S; Podio, L;

Publicação
ASTRONOMY & ASTROPHYSICS

Abstract
Context. Z CMa is a complex pre-main sequence binary with a current separation of 110 mas, known to consist of an FU Orionis star (SE component) and an embedded Herbig Be star (NW component). Although it represents a well-studied and characterized system, the origin of photometric variabilities, the component properties, and the physical configuration of the system remain mostly unknown. Aims. Immediately when the late-2008 outburst of Z CMa was announced to the community, we initiated a high angular resolution imaging campaign aimed at characterizing the outburst state of both components of the system in the near-infrared. Methods. We used the VLT/NACO and the Keck/NIRC2 near-infrared adaptive optics instrument to monitor the astrometric position and the near-infrared photometry of the Z CMa components during the outburst phase and one year after. The VLT/SINFONI and Keck/OSIRIS integral field spectroscrographs were in addition used to characterize for the first time the resolved spectral properties of the FU Orionis and the Herbig Be component during and after the outburst. Results. We confirm that the NW star dominates the system flux in the 1.1-3.8 mu m range and is responsible for the photometric outburst. We extract the first medium-resolution (R similar to 2000-4000) near-infrared (1.1-2.4 mu m) spectra of the individual components. The SE component has a spectrum typical of FU Orionis objects. The NW component spectrum is characteristic of embedded outbursting protostars and EX Or objects. It displays numerous emission lines whose intensity correlates with the system activity. In particular, we find a correlation between the Br gamma equivalent width and the system brightness. The bluing of the continuum of the NW component along with the absolute flux and color-variation of the system during the outburst suggests that the outburst was caused by a complex interplay between a variation of the extinction in the line of sight of the NW component on one hand, and the emission of shocked regions close to the NW component on the other. We confirm the recently reported wiggling of the SE component jet from [Fe II] line emission. We find a point-like structure associated with a peak emission at 2.098 mu m coincidental with the clump or arm seen in broadband polarization di ff erential imaging as well as additional di ff use emission along a PA = 214 degrees. The origin of these two structures is unclear and deserves further investigation.

2017

First light for GRAVITY: Phase referencing optical interferometry for the Very Large Telescope Interferometer

Autores
Abuter, R; Accardo, M; Amorim, A; Anugu, N; Avila, G; Azouaoui, N; Benisty, M; Berger, JP; Blind, N; Bonnet, H; Bourget, P; Brandner, W; Brast, R; Buron, A; Burtscher, L; Cassaing, F; Chapron, F; Choquet, E; Clenet, Y; Collin, C; du Foresto, VC; de Wit, W; de Zeeuw, PT; Deen, C; Delplancke Stroebele, F; Dembet, R; Derie, F; Dexter, J; Duvert, G; Ebert, M; Eckart, A; Eisenhauer, F; Esselborn, M; Fedou, P; Finger, G; Garcia, P; Dabo, CEG; Lopez, RG; Gendron, E; Genzel, R; Gillessen, S; Gonte, F; Gordo, P; Grould, M; Groezinger, U; Guieu, S; Haguenauer, P; Hans, O; Haubois, X; Haug, M; Haussmann, F; Henning, T; Hippler, S; Horrobin, M; Huber, A; Hubert, Z; Hubin, N; Hummel, CA; Jakob, G; Janssen, A; Jochum, L; Jocou, L; Kaufer, A; Kellner, S; Kendrew, S; Kern, L; Kervella, P; Kiekebusch, M; Klein, R; Kok, Y; Kolb, J; Kulas, M; Lacour, S; Lapeyrere, V; Lazareff, B; Le Bouquin, JB; Lena, P; Lenzen, R; Leveque, S; Lippa, M; Magnard, Y; Mehrgan, L; Mellein, M; Merand, A; Moreno Ventas, J; Moulin, T; Mueller, E; Mueller, F; Neumann, U; Oberti, S; Ott, T; Pallanca, L; Panduro, J; Pasquini, L; Paumard, T; Percheron, I; Perraut, K; Perrin, G; Pflueger, A; Pfuhl, O; Duc, TP; Plewa, PM; Popovic, D; Rabien, S; Ramirez, A; Ramos, J; Rau, C; Riquelme, M; Rohloff, RR; Rousset, G; Sanchez Bermudez, J; Scheithauer, S; Schoeller, M; Schuhler, N; Spyromilio, J; Straubmeier, C; Sturm, E; Suarez, M; Tristram, KRW; Ventura, N; Vincent, F; Waisberg, I; Wank, I; Weber, J; Wieprecht, E; Wiest, M; Wiezorrek, E; Wittkowski, M; Woillez, J; Wolff, B; Yazici, S; Ziegler, D; Zins, G;

Publicação
ASTRONOMY & ASTROPHYSICS

Abstract
GRAVITY is a new instrument to coherently combine the light of the European Southern Observatory Very Large Telescope Interferometer to form a telescope with an equivalent 130m diameter angular resolution and a collecting area of 200 m(2). The instrument comprises fiber fed integrated optics beam combination, high resolution spectroscopy, built-in beam analysis and control, near-infrared wavefront sensing, phase-tracking, dual-beam operation, and laser metrology. GRAVITY opens up to optical/infrared interferometry the techniques of phase referenced imaging and narrow angle astrometry, in many aspects following the concepts of radio interferometry. This article gives an overview of GRAVITY and reports on the performance and the first astronomical observations during commissioning in 2015/16. We demonstrate phase-tracking on stars as faint as m(K) approximate to 10 mag, phase-referenced interferometry of objects fainter than m(K) approximate to 15 mag with a limiting magnitude of m(K) approximate to 17 mag, minute long coherent integrations, a visibility accuracy of better than 0.25%, and spectro-differential phase and closure phase accuracy better than 0.5 degrees, corresponding to a differential astrometric precision of better than ten microarcseconds (as). The dual-beam astrometry, measuring the phase difference of two objects with laser metrology, is still under commissioning. First observations show residuals as low as 50 mu as when following objects over several months. We illustrate the instrument performance with the observations of archetypical objects for the different instrument modes. Examples include the Galactic center supermassive black hole and its fast orbiting star S2 for phase referenced dual-beam observations and infrared wavefront sensing, the high mass X-ray binary BP Cru and the active galactic nucleus of PDS 456 for a few mu as spectro-differential astrometry, the T Tauri star S CrA for a spectro-differential visibility analysis, xi Tel and 24 Cap for high accuracy visibility observations, and eta Car for interferometric imaging with GRAVITY.

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