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Publicações

Publicações por Miriam Seoane Santos

2025

mdatagen: A python library for the artificial generation of missing data

Autores
Mangussi, AD; Santos, MS; Lopes, FL; Pereira, RC; Lorena, AC; Abreu, PH;

Publicação
NEUROCOMPUTING

Abstract
Missing data is characterized by the presence of absent values in data (i.e., missing values) and it is currently categorized into three different mechanisms: Missing Completely at Random, Missing At Random, and Missing Not At Random. When performing missing data experiments and evaluating techniques to handle absent values, these mechanisms are often artificially generated (a process referred to as data amputation) to assess the robustness and behavior of the used methods. Due to the lack of a standard benchmark for data amputation, different implementations of the mechanisms are used in related research (some are often not disclaimed), preventing the reproducibility of results and leading to an unfair or inaccurate comparison between existing and new methods. Moreover, for users outside the field, experimenting with missing data or simulating the appearance of missing values in real-world domains is unfeasible, impairing stress testing in machine learning systems. This work introduces mdatagen, an open source Python library for the generation of missing data mechanisms across 20 distinct scenarios, following different univariate and multivariate implementations of the established missing mechanisms. The package therefore fosters reproducible results across missing data experiments and enables the simulation of artificial missing data under flexible configurations, making it very versatile to mimic several real-world applications involving missing data. The source code and detailed documentation for mdatagen are available at https://github.com/ArthurMangussi/pymdatagen.

2025

The Role of Deep Learning in Medical Image Inpainting: A Systematic Review

Autores
Santos, JC; Alexandre, HTP; Santos, MS; Abreu, PH;

Publicação
ACM TRANSACTIONS ON COMPUTING FOR HEALTHCARE

Abstract
Image inpainting is a crucial technique in computer vision, particularly for reconstructing corrupted images. In medical imaging, it addresses issues from instrumental errors, artifacts, or human factors. The development of deep learning techniques has revolutionized image inpainting, allowing for the generation of high-level semantic information to ensure structural and textural consistency in restored images. This article presents a comprehensive review of 53 studies on deep image inpainting in medical imaging, analyzing its evolution, impact, and limitations. The findings highlight the significance of deep image inpainting in artifact removal and enhancing the performance of multi-task approaches by localizing and inpainting regions of interest. Furthermore, the study identifies magnetic resonance imaging and computed tomography as the predominant modalities and highlights generative adversarial networks and U-Net as preferred architectures. Future research directions include the development of blind inpainting techniques, the exploration of techniques suitable for 3D/4D images, multiple artifacts, and multi-task applications, and the improvement of architectures.

2024

Enhancing mammography: a comprehensive review of computer methods for improving image quality

Autores
Santos, JC; Santos, MS; Abreu, PH;

Publicação
PROGRESS IN BIOMEDICAL ENGINEERING

Abstract
Mammography imaging remains the gold standard for breast cancer detection and diagnosis, but challenges in image quality can lead to misdiagnosis, increased radiation exposure, and higher healthcare costs. This comprehensive review evaluates traditional and machine learning-based techniques for improving mammography image quality, aiming to benefit clinicians and enhance diagnostic accuracy. Our literature search, spanning 2015 - 2024, identified 115 articles focusing on contrast enhancement and noise reduction methods, including histogram equalization, filtering, unsharp masking, fuzzy logic, transform-based techniques, and advanced machine learning approaches. Machine learning, particularly architectures integrating denoising autoencoders with convolutional neural networks, emerged as highly effective in enhancing image quality without compromising detail. The discussion highlights the success of these techniques in improving mammography images' visual quality. However, challenges such as high noise ratios, inconsistent evaluation metrics, and limited open-source datasets persist. Addressing these issues offers opportunities for future research to further advance mammography image enhancement methodologies.

2019

Generating Synthetic Missing Data: A Review by Missing Mechanism

Autores
Santos, MS; Pereira, RC; Costa, AF; Soares, JP; Santos, JAM; Abreu, PH;

Publicação
IEEE Access

Abstract

2017

HCC Survival

Autores
Santos, MS; Abreu, PH; García Laencina, PJ; Simão, A; Carvalho, A;

Publicação

Abstract

2017

Influence of Data Distribution in Missing Data Imputation

Autores
Santos, MS; Soares, JP; Abreu, PH; Araújo, H; Santos, JAM;

Publicação
Artificial Intelligence in Medicine - 16th Conference on Artificial Intelligence in Medicine, AIME 2017, Vienna, Austria, June 21-24, 2017, Proceedings

Abstract

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