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Sobre

Sobre

Nelson Machado (NM) é doutorado em Bioquímica, com especialização em Biofísica Molecular, e licenciado em Química, ambos os títulos obtidos na Universidade de Coimbra (Portugal), além de possuir um Mestrado em Enologia e Viticultura, pela UTAD (Vila Real, Portugal).

Com 10 anos de experiência nas cadeias agroalimentares e no setor vitivinícola, dedicou-se à valorização de produtos agroalimentares, incluindo uva e vinho, tendo estudado uma vasta gama de matrizes biológicas, como leguminosas e frutas (incluindo subprodutos), enquanto desenvolvia ferramentas ecológicas baseadas em espectroscopia para a sua avaliação. Foi coorientador de 3 teses, concluídas com sucesso, no âmbito do programa doutoral ‘Agricultural Production Chains – From Fork to Farm’ da UTAD. Foi coautor premiado em 6 distinções e vencedor do concurso 'FoodValorization' em 2019.

A sua experiência no estrangeiro inclui trabalho desenvolvido na UMA (Málaga, Espanha) e no ISIS-RAL (Oxford, Reino Unido) durante o doutoramento, bem como em Itália (UNIFI, Florença), no seu primeiro pós-doutoramento. Atualmente, NM possui um perfil diversificado, com 43 artigos publicados em revistas científicas com revisão por pares, em áreas que vão desde a físico-química molecular até ao setor agroalimentar, totalizando mais de 1000 citações e um índice *h* de 18.

NM trabalhou quase 5 anos num Laboratório Colaborativo, entidades que visam colmatar o fosso entre a academia e as empresas, como Senior Project Officer, num cargo de gestão (equipa e projetos). Assim, possui um conhecimento profundo tanto dos desafios enfrentados pelo setor produtivo como dos processos necessários para os superar, bem como dos mecanismos de financiamento disponíveis.

NM ingressou no INESC TEC em maio de 2024, através do projeto PhenoBot, onde está focado em Biologia de Sistemas (BioSys) e no desenvolvimento de métodos de Alto Débito, para apoiar principalmente o setor vitivinícola.

Tópicos
de interesse
Detalhes

Detalhes

  • Nome

    Nelson Machado
  • Cargo

    Investigador Auxiliar
  • Desde

    15 maio 2024
Publicações

2023

Calibration for an Ensemble of Grapevine Phenology Models under Different Optimization Algorithms

Autores
Yang, CY; Menz, C; Reis, S; Machado, N; Santos, JA; Torres-Matallana, JA;

Publicação
AGRONOMY-BASEL

Abstract
Vine phenology modelling is increasingly important for winegrowers and viticulturists. Model calibration is often required before practical applications. However, when multiple models and optimization methods are applied for different varieties, it is rarely known which factor tends to mostly affect the calibration results. We mainly aim to investigate the main source of the variability in the modelling errors for the flowering timings of two important varieties of vine in the Douro Demarcated Region (DDR) of Portugal; this is based on five phenology model simulations that use optimal parameters and that are estimated by three optimization algorithms (MLE, SA and SCE-UA). Our results indicate that the main source of the variability in calibration can be affected by the initially assumed parameter boundary. Restricting the initial parameter distribution to a narrow range impedes the algorithm from exploring the full parameter space and searching for optimal parameters. This can lead to the largest variation in different models. At an identified appropriate boundary, the difference between the two varieties represents the largest source of uncertainty, while the choice of algorithm for calibration contributes least to the overall uncertainty. The smaller variability among different models or algorithms (tools for analysis) compared to between different varieties could indicate the overall reliability of the calibration. All optimization algorithms show similar results in terms of the obtained goodness-of-fit: the RMSE (MAE) is 5-6 (4-5) days with a negligible mean bias and moderately good R-2 (0.5-0.6) for the ensemble median predictor. Nevertheless, a similar predictive performance can result from differently estimated parameter values, due to the equifinality or multi-modal issue in which different parameter combinations give similar results. This mainly occurs for models with a non-linear structure compared to those with a near-linear one. Yet, the former models are found to outperform the latter ones in predicting the flowering timing of the two varieties in the DDR. Overall, our findings highlight the importance of carefully defining the initial parameter boundary and decomposing the total variance of prediction errors. This study is expected to bring new insights that will help to better inform users about the importance of choice when these factors are involved in calibration. Nonetheless, the importance of each factor can change depending on the specific situation. Details of how the optimization methods are applied and of the continuous model improvement are important.

2022

Application of Fourier transform infrared spectroscopy (FTIR) techniques in the mid-IR (MIR) and near-IR (NIR) spectroscopy to determine n-alkane and long-chain alcohol contents in plant species and faecal samples

Autores
Ferreira, L; Machado, N; Gouvinhas, I; Santos, S; Celaya, R; Rodrigues, M; Barros, A;

Publicação
SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY

Abstract
n-Alkanes and long-chain alcohols (LCOH) have been used as faecal markers to assess the feeding behaviour of both wild and domestic herbivore species. However, their chemical analysis is time-consuming and expensive, making it necessary to develop more expeditious methodologies to evaluate concentrations of these markers. This work aimed to evaluate the use of Fourier Transform Infrared Spectroscopy (FTIR) technology in the near infrared (NIR) and mid infrared (MIR) intervals, for the determination of n-alkane and LCOH concentrations of different plant species and faecal samples of domestic herbivores. Spectra of 33 feed samples, namely L. perenne, T. repens, U. gallii, short heathers (mixture of Erica spp. and Calluna vulgaris), improved pasture grasses (mixture of L. perenne and A. capillaris), heath grasses (mixture of P. longifolium and A. curtissii), improved pasture species (mixture of L. perenne, T. repens and A. capillaris) and herbaceous species (mixture of all herbaceous species found in the plot)) and 181 faecal samples (cattle and horses) were recorded. In order to develop calibrations for the prediction of n-alkanes and LCOH concentrations, partial least squares (PLS) regression was used. Regarding the models developed for plant species, the best results were observed for the calibrations using NIR. The best external validation coefficients of determination (R(2)v) obtained were 0.90 and 0.79 for LCOH and n-alkanes, respectively. For faecal samples, in the NIR interval, results indicate similar external validation predictions (R(2)v) for both animal species (0.64). On the contrary, in the MIR interval, differences between cattle (0.70) and horses (0.57) faecal samples in R(2)v were observed. Regarding the models created for both animal species faeces, LCOH (C-26-OH and C-30-OH concentrations ranging from 713.3 to 4451.9 mg/kg DM, respectively; R(2)v values ranging from 0.72 to 0.95) and n-alkanes (C31 and C33 concentrations ranging from 112.8 to 643.2 mg/kg DM, respectively; R(2)v values ranging from 0.19 to 0.90) present in higher concentrations tended to be those with better estimates. Results obtained suggest that the selection of the technique to be used may depend on the type of matrix, being the homogeneity of the matrices one of the most important factors for its success. In order to improve the accuracy and robustness of the models created for the estimation of the concentrations of these markers using these methodologies, the database (greater variability) used for the calibrations of these models must be increased.

2022

Fine-tuning of grapevine xanthophyll-cycle and energy dissipation under Mediterranean conditions by kaolin particle-film

Autores
Bernardo, S; Rodrigo, MJ; Vives Peris, V; Gomez Cadenas, A; Zacarias, L; Machado, N; Moutinho Pereira, J; Dinis, LT;

Publicação
SCIENTIA HORTICULTURAE

Abstract
Kaolin-particle film has been considered a low-cost technology to mitigate the adverse effects of high light and temperature, and drought in several crops. However, the underlying excess energy absorption and dissipation mechanisms, and related components associated with kaolin photoprotective effects in grapevines are poorly explored. This study aims to understand the interactions between kaolin foliar treatment and photosynthetic pigments accumulation, carotenoids metabolism, xanthophyll cycle regulation, and its putative role on the non photochemical quenching (NPQ) processes in Touriga-Franca (TF) and Touriga-Nacional (TN) varieties. The experiments were conducted during the 2017 summer season in a commercial vineyard, and measurements were performed at pre-dawn and midday in each sampling date (EL35 - veraison; EL38 - full mature). Overall, TF variety showed higher accumulation of chlorophylls, xanthophylls, and de-epoxidation state (DPS) than TN. Kaolin treatment enhanced TN chlorophyll accumulation up to 114 % at EL35 (veraison) and 123 % at EL38 (full mature), highlighting its protective role on chlorophyll degradation, while no changes were found in TF, which might indicate a lower need for particle-film technology in this variety under the current environmental conditions. Individual carotenoids were mainly higher in the treated leaves of both varieties, as well as the xanthophyll cycle pigments zeaxanthin (Z(x)) and violaxanthin (V-x). Simultaneously, the DPS and NPQ values were lower in TN and TF treated leaves (1.92 - 2.36) compared to untreated vines (3.19 - 3.24), suggesting that there might be other components influencing NPQ levels beyond Z(x), with an indirect role in long-lasting NPQ processes. In addition, in the TF kaolin-treated leaves, violaxanthin de-epoxidase (VvVDE1) and zeaxanthin epoxidase (VvZEP1) gene expression were respectively 3-fold and 4-fold upregulated at stage EL35, while VvZEP1 gene expression decreased at stage EL38 in TN kaolin-treated leaves, indicating an optimised regulation of the xanthophyll cycle. These findings suggest that kaolin treatment promoted a fine-tuning of grapevine summer stress responses under sustained summer stress factors, by managing xanthophyll cycle dynamics, and pigments accumulation.

2022

Uncovering the effects of kaolin on balancing berry phytohormones and quality attributes of Vitis vinifera grown in warm-temperate climate regions

Autores
Bernardo, S; Dinis, LT; Machado, N; Barros, A; Pitarch Bielsa, M; Malheiro, AC; Gomez Cadenas, A; Moutinho Pereira, J;

Publicação
JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Abstract
BACKGROUND The application of kaolin particle film is considered a short-term strategy against several environmental stresses in areas with a Mediterranean-like climate. However, it is known that temperature fluctuations and water availability over the season can jeopardize kaolin efficiency in many Mediterranean crops. Hence, this study aims to evaluate the effects of kaolin foliar application on berry phytohormones, antioxidant defence, and oenological parameters at veraison and harvest stages of Touriga-Franca (TF) and Touriga-Nacional (TN) grapevines in two growing seasons (2017 and 2018). The 2017 growing season was considered the driest (-147.1 dryness index) and the warmest (2705 degrees C growing degree days) of the study. RESULTS In 2017, TF kaolin-treated berries showed lower salicylic acid (-26.6% compared with unsprayed vines) and abscisic acid (ABA) (-10.5%) accumulation at veraison, whereas salicylic acid increased up to 28.8% at harvest. In a less hot season, TN and TF kaolin-treated grapevines showed a twofold in ABA content and a threefold increase in the indole-3-acetic acid content at veraison and lower ABA levels (83.8%) compared with unsprayed vines at harvest. Treated berries showed a decreased sugar content, without compromising malic and tartaric acid levels, and reactive oxygen species accumulation throughout berry ripening. CONCLUSION The results suggest kaolin exerts a delaying effect in triggering ripening-related processes under severe summer stress conditions. Treated berries responded with improved antioxidant defence and phytohormone balance, showing significant interactions between kaolin treatment, variety, and developmental stage in both assessed years. (c) 2021 Society of Chemical Industry.

2021

Kaolin impacts on hormonal balance, polyphenolic composition and oenological parameters in red grapevine berries during ripening

Autores
Bernardo, S; Dinis, LT; Machado, N; Barros, A; Pitarch Bielsa, M; Gomez Cadenas, A; Moutinho Pereira, J;

Publicação
JOURNAL OF BERRY RESEARCH

Abstract
BACKGROUND: Kaolin particle-film application is a well-known strategy to avoid fruit damage. However, its putative role in balancing berry ripening under a changing climate remains poorly explored. OBJECTIVE: We assessed kaolin treatment effect on several ripening berry components, hormonal balance and oenological parameters of the field-grown Touriga-Franca (TF) and Touriga-Nacional (TN) grapevine varieties at veraison (EL35) and ripening (EL38) during two growing seasons (2017 and 2018). RESULTS: Under the adverse summer conditions (two heatwave events) of 2017, kaolin application increased 211.2 % and 51.4 % the salicylic acid (SA) and abscisic acid (ABA) levels in TF berries at EL38, while no significant differences were observed in TN. Conversely, TF, and TN kaolin treated berries showed lower SA and ABAaccumulation in 2018, respectively. Tartaric acid content increased about 17.2 %, and 24.2 % in TF and TN treated berries at stage EL35 in the 2017 growing season. Though kaolin treatment had no consistent effect on anthocyanins accumulation, flavonoids, ortho-diphenols and tannins increased in kaolin treated grapevines in 2017. CONCLUSIONS: This study highlights the key role of climate in triggering ripening related processes and fruit quality potential. Nevertheless, kaolin treated grapevines displayed an improved response to oxidative stress signals by increasing secondary metabolites accumulation in warm vintages. Kaolin application promoted different varietal responses, with a possible ripening delaying effect in TF, reinforcing its efficiency in alleviating severe summer stress impacts.