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Publications

2024

DeepClean - Contrastive Learning Towards Quality Assessment in Large-Scale CXR Data Sets

Authors
Pereira, SC; Pedrosa, J; Rocha, J; Sousa, P; Campilho, A; Mendon a, AM;

Publication
2024 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE, BIBM

Abstract
Large-scale datasets are essential for training deep learning models in medical imaging. However, many of these datasets contain poor-quality images that can compromise model performance and clinical reliability. In this study, we propose a framework to detect non-compliant images, such as corrupted scans, incomplete thorax X-rays, and images of non-thoracic body parts, by leveraging contrastive learning for feature extraction and parametric or non-parametric scoring methods for out-ofdistribution ranking. Our approach was developed and tested on the CheXpert dataset, achieving an AUC of 0.75 in a manually labeled subset of 1,000 images, and further qualitatively and visually validated on the external PadChest dataset, where it also performed effectively. Our results demonstrate the potential of contrastive learning to detect non-compliant images in largescale medical datasets, laying the foundation for future work on reducing dataset pollution and improving the robustness of deep learning models in clinical practice.

2024

Floralens: a Deep Learning Model for the Portuguese Native Flora

Authors
Filgueiras, A; Marques, ERB; Lopes, LMB; Marques, M; Silva, H;

Publication
CoRR

Abstract

2024

Plasmonic nanoparticle sensors: current progress, challenges, and future prospects

Authors
Kant, K; Beeram, R; Cao, Y; dos Santos, PSS; González-Cabaleiro, L; Garcia-Lojo, D; Guo, H; Joung, YJ; Kothadiya, S; Lafuente, M; Leong, YX; Liu, YY; Liu, YX; Moram, SSB; Mahasivam, S; Maniappan, S; Quesada-González, D; Raj, D; Weerathunge, P; Xia, XY; Yu, Q; Abalde-Cela, S; Alvarez-Puebla, RA; Bardhan, R; Bansal, V; Choo, J; Coelho, LCC; de Almeida, JMMM; Gómez-Graña, S; Grzelczak, M; Herves, P; Kumar, J; Lohmueller, T; Merkoçi, A; Montaño-Priede, JL; Ling, XY; Mallada, R; Pérez-Juste, J; Pina, MP; Singamaneni, S; Soma, VR; Sun, MT; Tian, LM; Wang, JF; Polavarapu, L; Santos, IP;

Publication
NANOSCALE HORIZONS

Abstract
Plasmonic nanoparticles (NPs) have played a significant role in the evolution of modern nanoscience and nanotechnology in terms of colloidal synthesis, general understanding of nanocrystal growth mechanisms, and their impact in a wide range of applications. They exhibit strong visible colors due to localized surface plasmon resonance (LSPR) that depends on their size, shape, composition, and the surrounding dielectric environment. Under resonant excitation, the LSPR of plasmonic NPs leads to a strong field enhancement near their surfaces and thus enhances various light-matter interactions. These unique optical properties of plasmonic NPs have been used to design chemical and biological sensors. Over the last few decades, colloidal plasmonic NPs have been greatly exploited in sensing applications through LSPR shifts (colorimetry), surface-enhanced Raman scattering, surface-enhanced fluorescence, and chiroptical activity. Although colloidal plasmonic NPs have emerged at the forefront of nanobiosensors, there are still several important challenges to be addressed for the realization of plasmonic NP-based sensor kits for routine use in daily life. In this comprehensive review, researchers of different disciplines (colloidal and analytical chemistry, biology, physics, and medicine) have joined together to summarize the past, present, and future of plasmonic NP-based sensors in terms of different sensing platforms, understanding of the sensing mechanisms, different chemical and biological analytes, and the expected future technologies. This review is expected to guide the researchers currently working in this field and inspire future generations of scientists to join this compelling research field and its branches. This comprehensive review summarizes the past, present, and future of plasmonic NP-based sensors in terms of different sensing platforms, different chemical and biological analytes, and the expected future technologies.

2024

Augmented Democracy: Artificial Intelligence as a Tool to Fight Disinformation

Authors
Alcoforado, A; Ferraz, TP; Bustos, E; Oliveira, AS; Gerber, R; Santoro, GLDM; Fama, IC; Veloso, BM; Siqueira, FL; Costa, AHR;

Publication
Estudos Avancados

Abstract
One of the principles of digital democracy is to actively inform citizens and mobilize them to participate in the political debate. This paper introduces a tool that processes public political documents to make information accessible to citizens and specific professional groups. In particular, we investigate and develop artificial intelligence techniques for text mining from the Portuguese Diário da Assembleia da República to partition, analyze, extract and synthesize information contained in the minutes of parliamentary sessions. We also developed dashboards to show the extracted information in a simple and visual way, such as summaries of speeches and topics discussed. Our main objective is to increase transparency and accountability between elected officials and voters, rather than characterizing political behavior. © (2024), (SciELO-Scientific Electronic Library Online). All Rights Reserved.

2024

Exploring Frama-C Resources by Verifying Space Software

Authors
Busquim e Silva, RA; Arai, NN; Burgareli, LA; Parente de Oliveira, JM; Sousa Pinto, J;

Publication
Computer Science Foundations and Applied Logic

Abstract

2024

Clinical Perspectives on the Use of Computer Vision in Glaucoma Screening

Authors
Camara, J; Cunha, A;

Publication
MEDICINA-LITHUANIA

Abstract
Glaucoma is one of the leading causes of irreversible blindness in the world. Early diagnosis and treatment increase the chances of preserving vision. However, despite advances in techniques for the functional and structural assessment of the retina, specialists still encounter many challenges, in part due to the different presentations of the standard optic nerve head (ONH) in the population, the lack of explicit references that define the limits of glaucomatous optic neuropathy (GON), specialist experience, and the quality of patients' responses to some ancillary exams. Computer vision uses deep learning (DL) methodologies, successfully applied to assist in the diagnosis and progression of GON, with the potential to provide objective references for classification, avoiding possible biases in experts' decisions. To this end, studies have used color fundus photographs (CFPs), functional exams such as visual field (VF), and structural exams such as optical coherence tomography (OCT). However, it is still necessary to know the minimum limits of detection of GON characteristics performed through these methodologies. This study analyzes the use of deep learning (DL) methodologies in the various stages of glaucoma screening compared to the clinic to reduce the costs of GON assessment and the work carried out by specialists, to improve the speed of diagnosis, and to homogenize opinions. It concludes that the DL methodologies used in automated glaucoma screening can bring more robust results closer to reality.

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