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Publications

2018

Causality assessment of adverse drug reaction reports using an expert-defined Bayesian network

Authors
Rodrigues, PP; Ferreira Santos, D; Silva, A; Polonia, J; Ribeiro Vaza, I;

Publication
ARTIFICIAL INTELLIGENCE IN MEDICINE

Abstract
In pharmacovigilance, reported cases are considered suspected adverse drug reactions (ADR). Health authorities have thus adopted structured causality assessment methods, allowing the evaluation of the likelihood that a drug was the causal agent of an adverse reaction. The aim of this work was to develop and validate a new causality assessment support system used in a regional pharmacovigilance centre. A Bayesian network was developed, for which the structure was defined by experts while the parameters were learnt from 593 completely filled ADR reports evaluated by the Portuguese Northern Pharmacovigilance Centre medical expert between 2000 and 2012. Precision, recall and time to causality assessment (TTA) was evaluated, according to the WHO causality assessment guidelines, in a retrospective cohort of 466 reports (April-September 2014) and a prospective cohort of 1041 reports (January-December 2015). Additionally, a simplified assessment matrix was derived from the model, enabling its preliminary direct use by notifiers. Results show that the network was able to easily identify the higher levels of causality (recall above 80%), although struggling to assess reports with a lower level of causality. Nonetheless, the median (Q1:Q3) ITA was 4 (2:8) days using the network and 8 (5:14) days using global introspection, meaning the network allowed a faster time to assessment, which has a procedural deadline of 30 days, improving daily activities in the centre. The matrix expressed similar validity, allowing an immediate feedback to the notifiers, which may result in better future engagement of patients and health professionals in the pharmacovigilance system.

2018

Tracking Anterior Mitral Leaflet in Echocardiographic Videos Using Morphological Operators and Active Contours

Authors
Sultan, MS; Martins, N; Costa, E; Veiga, D; Ferreira, MJA; Mattos, S; Coimbra, MT;

Publication
BIOMEDICAL ENGINEERING SYSTEMS AND TECHNOLOGIES (BIOSTEC 2017)

Abstract
Rheumatic heart disease is the result of damage to the heart valves, more often the mitral valve. The heart valves leaflets get inflamed, scarred and stretched which interrupts the normal blood flow, resulting into serious health condition. Measuring and quantifying clinically relevant features, like thickness, mobility and shape can help to analyze the functionality of the valve, identify early cases of disease and reduce the disease burden. To obtain these features, the first step is to automatically delineate the relevant structures, such as the anterior mitral valve leaflet, throughout the echocardiographic video. In this work, we proposed a near real time method to track the anterior mitral leaflet in ultrasound videos using the parasternal long axis view. The method is semi-automatic, requiring a manual delineation of the anterior mitral leaflet in the first frame of the video. The method uses mathematical morphological techniques to obtain the rough boundaries of the leaflet and are further refined by the localized active contour framework. The mobility of the leaflet was also obtained, providing us the base to analyze the functionality of the valve (opening and closing). The algorithm was tested on 67 videos with 6432 frames. It outperformed with respect to the time consumption (0.4 s/frame), with the extended modified Hausdorff distance error of 3.7 pixels and the improved tracking performance (less failure).

2018

Multi-objective portfolio optimization of electricity markets participation

Authors
Faia, R; Pinto, T; Vale, Z; Corchado, JM;

Publication
20th Power Systems Computation Conference, PSCC 2018

Abstract
Power and energy systems are being subject to relevant changes, mostly due to the large increase of distributed generation. These changes include the deregulation of electricity markets, which has become a more competitive marketplace due to the increase of the number of players based on renewable energy sources. This paper proposes a new portfolio optimization model for the participation in multiple alternative/complementary market opportunities, considering the risk management. The proposed model considers electricity as the asset to be negotiated. The risk is measured using the prediction error of electricity prices. A case study based on real data from Iberian electricity market-MIBEL assesses the results of the proposed model, using a particle swarm based optimization. Results show that using the proposed portfolio optimization model, market players are able to balance their market participation strategies depending on their risk aversion and profit seeking nature. © 2018 Power Systems Computation Conference.

2018

Multi-objective programming of pumped-hydro-thermal scheduling problem using normal boundary intersection and VIKOR

Authors
Simab, M; Javadi, MS; Nezhad, AE;

Publication
ENERGY

Abstract
The issue of environmental emissions has forced the power systems to use cleaner energy sources such as renewable and hydroelectric technologies. However, during recent decades due to the limitations on the available water in many regions, the optimal water reservoir usage has been highlighted. In this regard, this paper proposes a multi-objective model for short-term hydrothermal scheduling problem in the presence of the pumped-storage technology. It is noted that the framework well models the cascaded configuration of hydro reservoirs. Besides, in order to more accurately model the mentioned problem, a Mixed-Integer Non-Linear Programming (MINLP) optimization framework is presented. In this respect, the valve-loading effects occurred in thermal power generation technologies have been taken into account which turns the existing convex optimization problem into a non-convex one. In order to solve the mentioned problem, the Normal Boundary Intersection (NBI) method has been used while the VIKOR decision maker is employed to choose the most compromise solution amongst the Pareto optimal solutions obtained by NBI method. Finally, the efficiency of the proposed model has been verified through implementing four case studies and comparing the obtained results with those obtained by different methods. © 2017 Elsevier Ltd

2018

Augmented reality versus conventional interface: Is there any difference in effectiveness?

Authors
Brito, PQ; Stoyanova, J; Coelho, A;

Publication
MULTIMEDIA TOOLS AND APPLICATIONS

Abstract
The moment immediately before the "add to cart" decision is very critical in online shopping. Drawing on theories of transfer, spreading activation and human-computer interaction, the superiority of markerless Augmented Reality (AR) and Marker-based augmented reality (M) over Conventional Interactive (CI) is hypothesized. Although those multimedia tools are not part of the product/brand motivating the consumer interest they interfere in the interactive performance of the ecommerce. 150 consumers in a lab experiment showed higher emotional response, interactive response and brand evaluation in M and AR than CI. Contrary to what was expected the usability results were the inverse. That is, usability of CI outperforms M and AR. Considering only AR and M interfaces their effect on psychological variables was not statistically significant. A sophisticated or a simple interface had no impact on intention to buy the target brand, but the brand recommendation improved from M to AR. The differing effect of those three interface systems was mediated by brand familiarity, perceived risk, opinion leadership and positive emotional traits.

2018

Supervised deep learning embeddings for the prediction of cervical cancer diagnosis

Authors
Fernandes, K; Chicco, D; Cardoso, JS; Fernandes, J;

Publication
PEERJ COMPUTER SCIENCE

Abstract
Cervical cancer remains a significant cause of mortality all around the world, even if it can be prevented and cured by removing affected tissues in early stages. Providing universal and efficient access to cervical screening programs is a challenge that requires identifying vulnerable individuals in the population, among other steps. In this work, we present a computationally automated strategy for predicting the outcome of the patient biopsy, given risk patterns from individual medical records. We propose a machine learning technique that allows a joint and fully supervised optimization of dimensionality reduction and classification models. We also build a model able to highlight relevant properties in the low dimensional space, to ease the classification of patients. We instantiated the proposed approach with deep learning architectures, and achieved accurate prediction results (top area under the curve AUC = 0.6875) which outperform previously developed methods, such as denoising autoencoders. Additionally, we explored some clinical findings from the embedding spaces, and we validated them through the medical literature, making them reliable for physicians and biomedical researchers.

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