2020
Authors
Pinto, E; Marcos, G; Walters, C; Goncalves, F; Sacarlal, J; Castro, L; Rego, G;
Publication
PLOS ONE
Abstract
Background Palliative care is an essential part of medical practice but it remains limited, inaccessible, or even absent in low and middle income countries. Objectives To evaluate the general knowledge, attitudes, and practices of Mozambican physicians on palliative care. Methods A cross-sectional observational study was conducted between August 2018 and January 2019 in the 3 main hospitals of Mozambique, in addition to the only hospital with a standalone palliative care service. Data was collected from a self-administered survey directed to physicians in services with oncology patients. Results Two hundred and seven out of 306 physicians surveyed answered the questionnaire. The median physician age was 38 years. Fifty-five percent were males, and 49.8% residents. The most common medical specialty was surgery with 26.1%. Eighty percent of physicians answered that palliative care should be provided to patients when no curative treatments are available; 87% believed that early integration of palliative care can improve patients' quality of life; 73% regularly inform patients of a cancer diagnosis; 60% prefer to inform the diagnosis and prognosis to the family/caregivers. Fifty percent knew what a "do-not-resuscitate" order is, and 51% knew what palliative sedation is. Only 25% of the participants answered correctly all questions on palliative care general knowledge, and only 24% of the participants knew all answers about euthanasia. Conclusions Mozambican physicians in the main hospitals of Mozambique have cursory knowledge about palliative care. Paternalism and the family-centered model are the most prevalent. More interventions and training of professionals are needed to improve palliative care knowledge and practice in the country.
2020
Authors
Gouveia, P; Bessa, S; Oliveira, H; Batista, E; Aleluia, M; Ip, J; Costa, J; Nuno, L; Pinto, D; Mavioso, C; Anacleto, J; Abreu, N; Morgado, P; Martinho, M; Teixeira, J; Carvalho, P; Cardoso, J; Alves, C; Cardoso, F; Cardoso, MJ;
Publication
EUROPEAN JOURNAL OF CANCER
Abstract
2020
Authors
Aguet, F; Barbeira, AN; Bonazzola, R; Brown, A; Castel, SE; Jo, B; Kasela, S; Kim Hellmuth, S; Liang, Y; Oliva, M; Flynn, ED; Parsana, P; Fresard, L; Gamazon, ER; Hamel, AR; He, Y; Hormozdiari, F; Mohammadi, P; Muñoz Aguirre, M; Park, Y; Saha, A; Segrè, AV; Strober, BJ; Wen, X; Wucher, V; Ardlie, KG; Battle, A; Brown, CD; Cox, N; Das, S; Dermitzakis, ET; Engelhardt, BE; Garrido Martín, D; Gay, NR; Getz, GA; Guigó, R; Handsaker, RE; Hoffman, PJ; Im, HK; Kashin, S; Kwong, A; Lappalainen, T; Li, X; MacArthur, DG; Montgomery, SB; Rouhana, JM; Stephens, M; Stranger, BE; Todres, E; Viñuela, A; Wang, G; Zou, Y; Anand, S; Gabriel, S; Graubert, A; Hadley, K; Huang, KH; Meier, SR; Nedzel, JL; Nguyen, DT; Balliu, B; Conrad, DF; Cotter, DJ; deGoede, OM; Einson, J; Eskin, E; Eulalio, TY; Ferraro, NM; Gloudemans, MJ; Hou, L; Kellis, M; Li, X; Mangul, S; Nachun, DC; Nobel, AB; Park, Y; Rao, AS; Reverter, F; Sabatti, C; Skol, AD; Teran, NA; Wright, F; Ferreira, PG; Li, G; Melé, M; Yeger Lotem, E; Barcus, ME; Bradbury, D; Krubit, T; McLean, JA; Qi, L; Robinson, K; Roche, NV; Smith, AM; Sobin, L; Tabor, DE; Undale, A; Bridge, J; Brigham, LE; Foster, BA; Gillard, BM; Hasz, R; Hunter, M; Johns, C; Johnson, M; Karasik, E; Kopen, G; Leinweber, WF; McDonald, A; Moser, MT; Myer, K; Ramsey, KD; Roe, B; Shad, S; Thomas, JA; Walters, G; Washington, M; Wheeler, J; Jewell, SD; Rohrer, DC; Valley, DR; Davis, DA; Mash, DC; Branton, PA; Barker, LK; Gardiner, HM; Mosavel, M; Siminoff, LA; Flicek, P; Haeussler, M; Juettemann, T; Kent, WJ; Lee, CM; Powell, CC; Rosenbloom, KR; Ruffier, M; Sheppard, D; Taylor, K; Trevanion, SJ; Zerbino, DR; Abell, NS; Akey, J; Chen, L; Demanelis, K; Doherty, JA; Feinberg, AP; Hansen, KD; Hickey, PF; Jasmine, F; Jiang, L; Kaul, R; Kibriya, MG; Li, JB; Li, Q; Lin, S; Linder, SE; Pierce, BL; Rizzardi, LF; Smith, KS; Snyder, M; Stamatoyannopoulos, J; Tang, H; Wang, M; Carithers, LJ; Guan, P; Koester, SE; Little, AR; Moore, HM; Nierras, CR; Rao, AK; Vaught, JB; Volpi, S;
Publication
Science
Abstract
INTRODUCTION: The human genome contains tens of thousands of rare (minor allele frequency <1%) variants, some of which contribute to disease risk. Using 838 samples with whole-genome and multitissue transcriptome sequencing data in the Genotype-Tissue Expression (GTEx) project version 8, we assessed how rare genetic variants contribute to extreme patterns in gene expression (eOutliers), allelic expression (aseOutliers), and alternative splicing (sOutliers). We integrated these three signals across 49 tissues with genomic annotations to prioritize high-impact rare variants (RVs) that associate with human traits. RATIONALE: Outlier gene expression aids in identifying functional RVs. Transcriptome sequencing provides diverse measurements beyond gene expression, including allele-specific expression and alternative splicing, which can provide additional insight into RV functional effects. RESULTS: After identifying multitissue eOutliers, aseOutliers, and sOutliers, we found that outlier individuals of each type were significantly more likely to carry an RV near the corresponding gene. Among eOutliers, we observed strong enrichment of rare structural variants. sOutliers were particularly enriched for RVs that disrupted or created a splicing consensus sequence. aseOutliers provided the strongest enrichment signal when evaluated from just a single tissue. We developed Watershed, a probabilistic model for personal genome interpretation that improves over standard genomic annotation–based methods for scoring RVs by integrating these three transcriptomic signals from the same individual and replicates in an independent cohort. To assess whether outlier RVs identified in GTEx associate with traits, we evaluated these variants for association with diverse traits in the UK Biobank, the Million Veterans Program, and the Jackson Heart Study. We found that transcriptome-assisted prioritization identified RVs with larger trait effect sizes and were better predictors of effect size than genomic annotation alone. CONCLUSION: With >800 genomes matched with transcriptomes across 49 tissues, we were able to study RVs that underlie extreme changes in the transcriptome. To capture the diversity of these extreme changes, we developed and integrated approaches to identify expression, allele-specific expression, and alternative splicing outliers, and characterized the RV landscape underlying each outlier signal. We demonstrate that personal genome interpretation and RV discovery is enhanced by using these signals. This approach provides a new means to integrate a richer set of functional RVs into models of genetic burden, improve disease gene identification, and enable the delivery of precision genomics.
2020
Authors
Almeida, R; Jácome, C; Martinho, D; Vieira Marques, P; Jacinto, T; Ferreira, A; Almeida, A; Martins, C; Pereira, M; Pereira, A; Valente, J; Almeida, R; Vieira, A; Amaral, R; Sá Sousa, A; Gonçalves, I; Rodrigues, P; Alves Correia, M; Freitas, A; Marreiros, G; Fonseca, SC; Pereira, AC; Fonseca, JA;
Publication
Proceedings of the 12th IADIS International Conference e-Health 2020, EH 2020 - Part of the 14th Multi Conference on Computer Science and Information Systems, MCCSIS 2020
Abstract
Current tools for self-management of chronic obstructive respiratory diseases (CORD) are difficult to use, not individualized and requiring laborious analysis by health professionals, discouraging their use in healthcare. There is an opportunity for cost-effective and easy-to-disseminate advanced technological solutions directed to patients and attractive to different stakeholders. The strategy of AIRDOC is to develop and integrate self-monitoring and self-managing tools, making use of the smartphone's presence in everyday life. AIRDOC intends to innovate on: i) technologies for remote monitoring of respiratory function and computerized lung auscultation; ii) coaching solutions, integrating psychoeducation, gamification and disease management support systems; and iii) management of personal health data, focusing on security, privacy and interoperability. It is expected that AIRDOC results will contribute for the innovation in CORD healthcare, with increased patient involvement and empowerment while providing quality prospective information for better clinical decisions, allowing more efficient and sustainable healthcare delivery.
2020
Authors
Santos, MS; Abreu, PH; Wilk, S; Santos, JAM;
Publication
Artificial Intelligence in Medicine - 18th International Conference on Artificial Intelligence in Medicine, AIME 2020, Minneapolis, MN, USA, August 25-28, 2020, Proceedings
Abstract
In healthcare domains, dealing with missing data is crucial since absent observations compromise the reliability of decision support models. K-nearest neighbours imputation has proven beneficial since it takes advantage of the similarity between patients to replace missing values. Nevertheless, its performance largely depends on the distance function used to evaluate such similarity. In the literature, k-nearest neighbours imputation frequently neglects the nature of data or performs feature transformation, whereas in this work, we study the impact of different heterogeneous distance functions on k-nearest neighbour imputation for biomedical datasets. Our results show that distance functions considerably impact the performance of classifiers learned from the imputed data, especially when data is complex. © 2020, Springer Nature Switzerland AG.
2020
Authors
Silva, J; Praça, I; Pinto, T; Vale, Z;
Publication
DISTRIBUTED COMPUTING AND ARTIFICIAL INTELLIGENCE, 16TH INTERNATIONAL CONFERENCE, SPECIAL SESSIONS
Abstract
The increase of renewable energy sources of intermittent nature has brought several new challenges for power and energy systems. In order to deal with the variability from the generation side, there is the need to balance it by managing consumption appropriately. Forecasting energy consumption becomes, therefore, more relevant than ever. This paper presents and compares three different ensemble learning methods, namely random forests, gradient boosted regression trees and Adaboost. Hour-ahead electricity load forecasts are presented for the building N of GECAD at ISEP campus. The performance of the forecasting models is assessed, and results show that the Adaboost model is superior to the other considered models for the one-hour ahead forecasts. The results of this study compared to previous works indicates that ensemble learning methods are a viable choice for short-term load forecast. © 2020, Springer Nature Switzerland AG.
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