Cookies Policy
The website need some cookies and similar means to function. If you permit us, we will use those means to collect data on your visits for aggregated statistics to improve our service. Find out More
Accept Reject
  • Menu
Publications

Publications by Aurélio Campilho

2018

End-to-End Supervised Lung Lobe Segmentation

Authors
Ferreira, FT; Sousa, P; Galdran, A; Sousa, MR; Campilho, A;

Publication
IJCNN

Abstract
The segmentation and characterization of the lung lobes are important tasks for Computer Aided Diagnosis (CAD) systems related to pulmonary disease. The detection of the fissures that divide the lung lobes is non-trivial when using classical methods that rely on anatomical information like the localization of the airways and vessels. This work presents a fully automatic and supervised approach to the problem of the segmentation of the five pulmonary lobes from a chest Computer Tomography (CT) scan using a Fully RegularizedV-Net (FRV- Net), a 3D Fully Convolutional Neural Network trained end-to- end. Our network was trained and tested in a custom dataset that we make publicly available. It can correctly separate the lobes even in cases when the fissure is not well delineated, achieving 0.93 in per-lobe Dice Coefficient and 0.85 in the inter-lobar Dice Coefficient in the test set. Both quantitative and qualitative results show that the proposed method can learn to produce correct lobe segmentations even when trained on a reduced dataset.

2018

Editorial

Authors
Campilho, A;

Publication
U.Porto Journal of Engineering

Abstract
This Special Issue on Electrical and Computer Engineering includes selected papers from the 1st edition of the Symposium on Electrical and Computer Engineering (ECE 2015), one of the symposia included in the 1st Doctoral Congress in Engineering, held at FEUP, 11-12 June, 2015. ECE 2015 was an important forum for presenting the research activities of ECE students, particularly from the Doctoral Program in Electrical and Computer Engineering, at FEUP (PDEEC). ECE 2015 received a total of 42 two-page abstracts. The review process was carried out by members of the Symposium Scientific Committee and other reviewers. Each abstract was reviewed by at least two reviewers, and checked by the Program Committee. 37 abstracts were finally accepted and appear in the Symposium book of abstracts. From the 37 abstracts, 17 were presented in four oral sessions, and 20 in one poster session. We were very pleased to include two keynote talks: “The Internet of Things - Latest Trends and Future Perspectives” by Carlos Azeredo Leme, University of Lisbon, Portugal; “A Perspective on Virtual Radio Access Networks” by Luís M. Correia, University of Lisbon, Portugal. Six papers were invited to submit extended versions to this special issue, that were further reviewed and published in this issue.We would like to sincerely thank the authors for submitting these extended versions, and we thank the special issue reviewers for the careful evaluation and feedback provided to the authors. We also would like to express our gratitude to Luís Miguel Costa, for supporting the organization of this Special issue of the U.Porto Journal of Engineering.Finally, we are very pleased to give the readership of this Special Issue on ECE examples of the research developed by PDEEC students, from a vast area covered by the Electrical and Computer Engineering at FEUP and at the associated research institutes and research centers.

2019

An unsupervised metaheuristic search approach for segmentation and volume measurement of pulmonary nodules in lung CT scans

Authors
Shakibapour, E; Cunha, A; Aresta, G; Mendonça, AM; Campilho, A;

Publication
EXPERT SYSTEMS WITH APPLICATIONS

Abstract
This paper proposes a new methodology to automatically segment and measure the volume of pulmonary nodules in lung computed tomography (CT) scans. Estimating the malignancy likelihood of a pulmonary nodule based on lesion characteristics motivated the development of an unsupervised pulmonary nodule segmentation and volume measurement as a preliminary stage for pulmonary nodule characterization. The idea is to optimally cluster a set of feature vectors composed by intensity and shape-related features in a given feature data space extracted from a pre-detected nodule. For that purpose, a metaheuristic search based on evolutionary computation is used for clustering the corresponding feature vectors. The proposed method is simple, unsupervised and is able to segment different types of nodules in terms of location and texture without the need for any manual annotation. We validate the proposed segmentation and volume measurement on the Lung Image Database Consortium and Image Database Resource Initiative - LIDC-IDRI dataset. The first dataset is a group of 705 solid and sub-solid (assessed as part-solid and non-solid) nodules located in different regions of the lungs, and the second, more challenging, is a group of 59 sub-solid nodules. The average Dice scores of 82.35% and 71.05% for the two datasets show the good performance of the segmentation proposal. Comparisons with previous state-of-the-art techniques also show acceptable and comparable segmentation results. The volumes of the segmented nodules are measured via ellipsoid approximation. The correlation and statistical significance between the measured volumes of the segmented nodules and the ground-truth are obtained by Pearson correlation coefficient value, obtaining an R-value >= 92.16% with a significance level of 5%.

2018

Convolutional Neural Network Architectures for Texture Classification of Pulmonary Nodules

Authors
Ferreira, CA; Cunha, A; Mendonça, AM; Campilho, A;

Publication
CIARP

Abstract
Lung cancer is one of the most common causes of death in the world. The early detection of lung nodules allows an appropriate follow-up, timely treatment and potentially can avoid greater damage in the patient health. The texture is one of the nodule characteristics that is correlated with the malignancy. We developed convolutional neural network architectures to classify automatically the texture of nodules into the non-solid, part-solid and solid classes. The different architectures were tested to determine if the context, the number of slices considered as input and the relation between slices influence on the texture classification performance. The architecture that obtained better performance took into account different scales, different rotations and the context of the nodule, obtaining an accuracy of 0.833 ± 0.041.

2019

CATARACTS: Challenge on automatic tool annotation for cataRACT surgery

Authors
Al Hajj, H; Lamard, M; Conze, PH; Roychowdhury, S; Hu, XW; Marsalkaite, G; Zisimopoulos, O; Dedmari, MA; Zhao, FQ; Prellberg, J; Sahu, M; Galdran, A; Araujo, T; Vo, DM; Panda, C; Dahiya, N; Kondo, S; Bian, ZB; Vandat, A; Bialopetravicius, J; Flouty, E; Qiu, CH; Dill, S; Mukhopadhyay, A; Costa, P; Aresta, G; Ramamurthys, S; Lee, SW; Campilho, A; Zachow, S; Xia, SR; Conjeti, S; Stoyanov, D; Armaitis, J; Heng, PA; Macready, WG; Cochener, B; Quellec, G;

Publication
MEDICAL IMAGE ANALYSIS

Abstract
Surgical tool detection is attracting increasing attention from the medical image analysis community. The goal generally is not to precisely locate tools in images, but rather to indicate which tools are being used by the surgeon at each instant. The main motivation for annotating tool usage is to design efficient solutions for surgical workflow analysis, with potential applications in report generation, surgical training and even real-time decision support. Most existing tool annotation algorithms focus on laparoscopic surgeries. However, with 19 million interventions per year, the most common surgical procedure in the world is cataract surgery. The CATARACTS challenge was organized in 2017 to evaluate tool annotation algorithms in the specific context of cataract surgery. It relies on more than nine hours of videos, from 50 cataract surgeries, in which the presence of 21 surgical tools was manually annotated by two experts. With 14 participating teams, this challenge can be considered a success. As might be expected, the submitted solutions are based on deep learning. This paper thoroughly evaluates these solutions: in particular, the quality of their annotations are compared to that of human interpretations. Next, lessons learnt from the differential analysis of these solutions are discussed. We expect that they will guide the design of efficient surgery monitoring tools in the near future.

2019

End-to-End Ovarian Structures Segmentation

Authors
Wanderley, DS; Carvalho, CB; Domingues, A; Peixoto, C; Pignatelli, D; Beires, J; Silva, J; Campilho, A;

Publication
PROGRESS IN PATTERN RECOGNITION, IMAGE ANALYSIS, COMPUTER VISION, AND APPLICATIONS, CIARP 2018

Abstract
The segmentation and characterization of the ovarian structures are important tasks in gynecological and reproductive medicine. Ultrasound imaging is typically used for the medical diagnosis within this field but the understanding of the images can be difficult due to their characteristics. Furthermore, the complexity of ultrasound data may lead to a heavy image processing, which makes the application of classical methods of computer vision difficult. This work presents the first supervised fully convolutional neural network (fCNN) for the automatic segmentation of ovarian structures in B-mode ultrasound images. Due to the small dataset available, only 57 images were used for training. In order to overcome this limitation, several regularization techniques were used and are discussed in this paper. The experiments show the ability of the fCNN to learn features to distinguish ovarian structures, achieving a Dice similarity coefficient (DSC) of 0.855 for the segmentation of the stroma and a DSC of 0.955 for the follicles. When compared with a semi-automatic commercial application for follicle segmentation, the proposed fCNN achieved an average improvement of 19%.

  • 14
  • 48