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Publications

Publications by Vitor Manuel Filipe

2024

Detection of Landmarks in X-Ray Images Through Deep Learning

Authors
Fernandes, M; Filipe, V; Sousa, A; Gonçalves, L;

Publication
WIRELESS MOBILE COMMUNICATION AND HEALTHCARE, MOBIHEALTH 2023

Abstract
This paper presents a study on the automated detection of landmarks in medical x-ray images using deep learning techniques. In this work we developed two neural networks based on semantic segmentation to automatically detect landmarks in x-ray images, using a dataset of 200 encephalogram images: the UNet architecture and the FPN architecture. The UNet and FPN architectures are compared and it can be concluded that the FPN model, with IoU=0.91, is more robust and accurate in predicting landmarks. The study also had the goal of direct application in a medical context of diagnosing the models and their predictions. Our research team also developed a metric analysis, based on the encephalograms in the dataset, on the type of Mandibular Occlusion of the patients, thus allowing a fast and accurate response in the identification and classification of a diagnosis. The paper highlights the potential of deep learning for automating the detection of anatomical landmarks in medical imaging, which can save time, improve diagnostic accuracy, and facilitate treatment planning. We hope to develop a universal model in the future, capable of evaluating any type of metric using image segmentation.

2024

Image Captioning for Coronary Artery Disease Diagnosis

Authors
Magalhaes, B; Pedrosa, J; Renna, F; Paredes, H; Filipe, V;

Publication
2024 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE, BIBM

Abstract
Coronary artery disease (CAD) remains a leading cause of morbidity and mortality worldwide, underscoring the need for accurate and reliable diagnostic tools. While AI- driven models have shown significant promise in identifying CAD through imaging techniques, their 'black box' nature often hinders clinical adoption due to a lack of interpretability. In response, this paper proposes a novel approach to image captioning specifically tailored for CAD diagnosis, aimed at enhancing the transparency and usability of AI systems. Utilizing the COCA dataset, which comprises gated coronary CT images along with Ground Truth (GT) segmentation annotations, we introduce a hybrid model architecture that combines a Vision Transformer (ViT) for feature extraction with a Generative Pretrained Transformer (GPT) for generating clinically relevant textual descriptions. This work builds on a previously developed 3D Convolutional Neural Network (CNN) for coronary artery segmentation, leveraging its accurate delineations of calcified regions as critical inputs to the captioning process. By incorporating these segmentation outputs, our approach not only focuses on accurately identifying and describing calcified regions within the coronary arteries but also ensures that the generated captions are clinically meaningful and reflective of key diagnostic features such as location, severity, and artery involvement. This methodology provides medical practitioners with clear, context-rich explanations of AI-generated findings, thereby bridging the gap between advanced AI technologies and practical clinical applications. Furthermore, our work underscores the critical role of Explainable AI (XAI) in fostering trust, improving decision- making, and enhancing the efficacy of AI-driven diagnostics, paving the way for future advancements in the field.

2021

Teoria e prática em sistemas de recomendação

Authors
Azambuja, Rogério Xavier de; Morais, A. Jorge; Filipe, Vítor;

Publication
Revista de Ciências da Computação

Abstract
Nas últimas décadas a utilização da inteligência artificial tem sido frequente no desenvolvimento de aplicações computacionais. Mais recentemente a aprendizagem automática, especialmente pelo uso da aprendizagem profunda (deep learning), tem impulsionado o crescimento e ampliado o desenvolvimento de sistemas inteligentes para diferentes domínios. No cenário atual de crescimento tecnológico estão a surgir com maior frequência os sistemas de recomendação (recommender systems) com diferentes técnicas para a filtragem de informações em grandes bases de dados. Um desafio é prover a recomendação adaptativa para mitigar a sobrecarga de informações em ambientes on-line. Este artigo revisa trabalhos anteriores e aborda alguns dos aspectos teórico-conceptuais e teórico-práticos que constituem os sistemas de recomendação, caracterizando o emprego de redes neuronais profundas (Deep Neural Network – DNN) para prover a recomendação sequencial apoiada pela recomendação baseada em sessão.;In recent decades, artificial intelligence use has been frequent in the computational applications development. More recently, machine learning, especially through the use of deep learning, has driven growth and expanded the intelligent systems development for different domains. In the current scenario of technological growth, the recommender systems appear with increasing frequency through their different techniques for information filtering in large datasets. It is a challenge to provide adaptive recommendation to mitigate information overload in online environments. This article reviews previous works and addresses some of the theoretical-conceptual and theoretical-practical aspects that constitute the recommender systems, characterizing the use of deep neural network (DNN) to provide sequential recommendation supported by session-based recommendation.

2024

Automated Assessment of Pelvic Longitudinal Rotation Using Computer Vision in Canine Hip Dysplasia Screening

Authors
Franco-Gonçalo, P; Leite, P; Alves-Pimenta, S; Colaço, B; Gonçalves, L; Filipe, V; Mcevoy, F; Ferreira, M; Ginja, M;

Publication
VETERINARY SCIENCES

Abstract
Canine hip dysplasia (CHD) screening relies on accurate positioning in the ventrodorsal hip extended (VDHE) view, as even mild pelvic rotation can affect CHD scoring and impact breeding decisions. This study aimed to assess the association between pelvic rotation and asymmetry in obturator foramina areas (AOFAs) and to develop a computer vision model for automated AOFA measurement. In the first part, 203 radiographs were analyzed to examine the relationship between pelvic rotation, assessed through asymmetry in iliac wing and obturator foramina widths (AOFWs), and AOFAs. A significant association was found between pelvic rotation and AOFA, with AOFW showing a stronger correlation (R-2 = 0.92, p < 0.01). AOFW rotation values were categorized into minimal (n = 71), moderate (n = 41), marked (n = 37), and extreme (n = 54) groups, corresponding to mean AOFA +/- standard deviation values of 33.28 +/- 27.25, 54.73 +/- 27.98, 85.85 +/- 41.31, and 160.68 +/- 64.20 mm(2), respectively. ANOVA and post hoc testing confirmed significant differences in AOFA across these groups (p < 0.01). In part two, the dataset was expanded to 312 images to develop the automated AOFA model, with 80% allocated for training, 10% for validation, and 10% for testing. On the 32 test images, the model achieved high segmentation accuracy (Dice score = 0.96; Intersection over Union = 0.93), closely aligning with examiner measurements. Paired t-tests indicated no significant differences between the examiner and model's outputs (p > 0.05), though the Bland-Altman analysis identified occasional discrepancies. The model demonstrated excellent reliability (ICC = 0.99) with a standard error of 17.18 mm(2). A threshold of 50.46 mm(2) enabled effective differentiation between acceptable and excessive pelvic rotation. With additional training data, further improvements in precision are expected, enhancing the model's clinical utility.

2024

Deep learning-based automated assessment of canine hip dysplasia

Authors
Loureiro, C; Gonçalves, L; Leite, P; Franco Gonçalo, P; Pereira, AI; Colaço, B; Alves Pimenta, S; McEvoy, F; Ginja, M; Filipe, V;

Publication
Multimedia Tools and Applications

Abstract
Radiographic canine hip dysplasia (CHD) diagnosis is crucial for breeding selection and disease management, delaying progression and alleviating the associated pain. Radiography is the primary imaging modality for CHD diagnosis, and visual assessment of radiographic features is sometimes used for accurate diagnosis. Specifically, alterations in femoral neck shape are crucial radiographic signs, with existing literature suggesting that dysplastic hips have a greater femoral neck thickness (FNT). In this study we aimed to develop a three-stage deep learning-based system that can automatically identify and quantify a femoral neck thickness index (FNTi) as a key metric to improve CHD diagnosis. Our system trained a keypoint detection model and a segmentation model to determine landmark and boundary coordinates of the femur and acetabulum, respectively. We then executed a series of mathematical operations to calculate the FNTi. The keypoint detection model achieved a mean absolute error (MAE) of 0.013 during training, while the femur segmentation results achieved a dice score (DS) of 0.978. Our three-stage deep learning-based system achieved an intraclass correlation coefficient of 0.86 (95% confidence interval) and showed no significant differences in paired t-test compared to a specialist (p > 0.05). As far as we know, this is the initial study to thoroughly measure FNTi by applying computer vision and deep learning-based approaches, which can provide reliable support in CHD diagnosis. © The Author(s) 2024.

2024

Enhancing Medical Imaging Through Data Augmentation: A Review

Authors
Teixeira, B; Pinto, G; Filipe, V; Teixeira, A;

Publication
COMPUTATIONAL SCIENCE AND ITS APPLICATIONS-ICCSA 2024 WORKSHOPS, PT II

Abstract
This article conducts a comprehensive review of the existing literature on data augmentation and data generation techniques within the context of medical image processing. Addressing the challenges associated with building sizable medical image datasets, including the rarity of certain medical conditions, patient privacy concerns, the need for expert labeling, and the associated expenses, this review focuses on methodologies aimed at enhancing the volume and diversity of available data. Special emphasis is placed on techniques such as data augmentation and data generation, with a particular interest in their application to medical image datasets. The objective is to provide a synthesis of current research, methodologies, and advancements in this domain, offering insights into the state-of-the-art practices and identifying potential avenues for future developments in medical image data augmentation.

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