Abstract
Protein aggregation became a widely accepted marker of many polyQ disorders, including Machado-Joseph disease (MJD), and is often used as readout for disease progression and development of therapeutic strategies. The lack of good platforms to rapidly quantify protein aggregates in a wide range of disease animal models prompted us to generate a novel image processing application that automatically identifies and quantifies the aggregates in a standardized and operator-independent manner. We propose here a novel image processing tool to quantify the protein aggregates in a Caenorhabditis elegans (C. elegans) model of MJD. Confocal microscopy images were obtained from animals of different genetic conditions. The image processing application was developed using MeVisLab as a platform to process, analyse and visualize the images obtained from those animals. All segmentation algorithms were based on intensity pixel levels. The quantification of area or numbers of aggregates per total body area, as well as the number of aggregates per animal were shown to be reliable and reproducible measures of protein aggregation in C. elegans. The results obtained were consistent with the levels of aggregation observed in the images. In conclusion, this novel imaging processing application allows the non-biased, reliable and high throughput quantification of protein aggregates in a C. elegans model of MJD, which may contribute to a significant improvement on the prognosis of treatment effectiveness for this group of disorders.

Abstract
The integration and composition of software systems requires a good architectural design phase to speed up communications between (remote) components. However, during implementation phase, the code to coordinate such components often ends up mixed in the main business code. This leads to maintenance problems, raising the need for, on the one hand, separating the coordination code from the business code, and on the other hand, providing mechanisms for analysis and comprehension of the architectural decisions once made. In this context our aim is at developing a domain-specific language, CoordL, to describe typical coordination patterns. From our point of view, coordination patterns are abstractions, in a graph form, over the composition of coordination statements from the system code. These patterns would allow us to identify, by means of pattern-based graph search strategies, the code responsible for the coordination of the several components in a system. The recovering and separation of the architectural decisions for a better comprehension of the software is the main purpose of this pattern language.

Abstract
In Computed Tomography (CT), bone segmentation is considered an important step to extract bone parameters, which are frequently useful for computer-aided diagnosis, surgery and treatment of many diseases such as osteoporosis. Consequently, the development of accurate and reliable segmentation techniques is essential, since it often provides a great impact on quantitative image analysis and diagnosis outcome. This chapter presents an automated multistep approach for bone segmentation in volumetric CT datasets. It starts with a three-dimensional (3D) watershed operation on an image gradient magnitude. The outcome of the watershed algorithm is an over-partioning image of many 3D regions that can be merged, yielding a meaningful image partitioning. In order to reduce the number of regions, a merging procedure was performed that merges neighbouring regions presenting a mean intensity distribution difference of ±15%. Finally, once all bones have been distinguished in high contrast, the final 3D bone segmentation was achieved by selecting all regions with bone fragments, using the information retrieved by a threshold mask. The bones contours were accurately defined according to the watershed regions outlines instead of considering the thresholding segmentation result. This new method was tested to segment the rib cage on 185 CT images, acquired at the São João Hospital of Porto (Portugal) and evaluated using the dice similarity coefficient as a statistical validation metric, leading to a coefficient mean score of 0.89. This could represent a step forward towards accurate and automatic quantitative analysis in clinical environments and decreasing time-consumption, user dependence and subjectivity.

Abstract
Pectus excavatum is the most common congenital deformity of the anterior thoracic wall. The surgical correction of such deformity, using Nuss procedure, consists in the placement of a personalized convex prosthesis into sub-sternal position to correct the deformity. The aim of this work is the CT-scan substitution by ultrasound imaging for the pre-operative diagnosis and pre-modeling of the prosthesis, in order to avoid patient radiation exposure. To accomplish this, ultrasound images are acquired along an axial plane, followed by a rigid registration method to obtain the spatial transformation between subsequent images. These images are overlapped to reconstruct an axial plane equivalent to a CT-slice. A phantom was used to conduct preliminary experiments and the achieved results were compared with the corresponding CT-data, showing that the proposed methodology can be capable to create a valid approximation of the anterior thoracic wall, which can be used to model/bend the prosthesis.

Abstract
Pectus excavatum is the most common congenital deformity of the anterior chest wall, in which an abnormal formation of the rib cage gives the chest a caved-in or sunken appearance. Today, the surgical correction of this deformity is carried out in children and adults through Nuss technic, which consists in the placement of a prosthetic bar under the sternum and over the ribs. Although this technique has been shown to be safe and reliable, not all patients have achieved adequate cosmetic outcome. This often leads to psychological problems and social stress, before and after the surgical correction. This paper targets this particular problem by presenting a method to predict the patient surgical outcome based on pre-surgical imagiologic information and chest skin dynamic modulation. The proposed approach uses the patient pre-surgical thoracic CT scan and anatomical-surgical references to perform a 3D segmentation of the left ribs, right ribs, sternum and skin. The technique encompasses three steps: a) approximation of the cartilages, between the ribs and the sternum, trough b-spline interpolation; b) a volumetric mass spring model that connects two layers - inner skin layer based on the outer pleura contour and the outer surface skin; and c) displacement of the sternum according to the prosthetic bar position. A dynamic model of the skin around the chest wall region was generated, capable of simulating the effect of the movement of the prosthetic bar along the sternum. The results were compared and validated with patient postsurgical skin surface acquired with Polhemus FastSCAN system.

Abstract
The success of the digital game industry is spawning several undergraduate degrees aiming at the training of digital game developers. Building adequate new courses curricula is not a trivial task and demands a profound analysis of the scientific areas to introduce as well as the dependencies throughout the entire degree. Another important aspect of every academic educational plan are the satellite projects that promote entrepreneurship and provide practical professional experiences to students. This paper presents the main guidelines adopted in the creation of the first digital game development undergraduate degree created in Portugal. © 2010 IEEE.