Cookies Policy
The website need some cookies and similar means to function. If you permit us, we will use those means to collect data on your visits for aggregated statistics to improve our service. Find out More
Accept Reject
  • Menu
Publications

Publications by Rui Camacho

2023

First insight into oral microbiome diversity in Papua New Guineans reveals a specific regional signature

Authors
Pedro, N; Brucato, N; Cavadas, B; Lisant, V; Camacho, R; Kinipi, C; Leavesley, M; Pereira, L; Ricaut, FX;

Publication
MOLECULAR ECOLOGY

Abstract
The oral microbiota is a highly complex and diversified part of the human microbiome. Being located at the interface between the human body and the exterior environment, this microbiota can deepen our understanding of the environmental impacts on the global status of human health. This research topic has been well addressed in Westernized populations, but these populations only represent a fraction of human diversity. Papua New Guinea hosts very diverse environments and one of the most unique human biological diversities worldwide. In this study we performed the first known characterization of the oral microbiome in 85 Papua New Guinean individuals living in different environments, using a qualitative and quantitative approach. We found a significant geographical structure of the Papua New Guineans oral microbiome, especially in the groups most isolated from urban spaces. In comparison to other global populations, two bacterial genera related to iron absorption were significantly more abundant in Papua New Guineans and Aboriginal Australians, which suggests a shared oral microbiome signature. Further studies will be needed to confirm and explore this possible regional-specific oral microbiome profile.

2017

Preface

Authors
Barbosa, J; Camacho, R; Dutra, I; Marques, O;

Publication
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Abstract

2023

An Inductive Logic Programming Approach for Entangled Tube Modeling in Bin Picking

Authors
Leao, G; Camacho, R; Sousa, A; Veiga, G;

Publication
ROBOT2022: FIFTH IBERIAN ROBOTICS CONFERENCE: ADVANCES IN ROBOTICS, VOL 2

Abstract
Bin picking is a challenging problem that involves using a robotic manipulator to remove, one-by-one, a set of objects randomly stacked in a container. When the objects are prone to entanglement, having an estimation of their pose and shape is highly valuable for more reliable grasp and motion planning. This paper focuses on modeling entangled tubes with varying degrees of curvature. An unconventional machine learning technique, Inductive Logic Programming (ILP), is used to construct sets of rules (theories) capable of modeling multiple tubes when given the cylinders that constitute them. Datasets of entangled tubes are created via simulation in Gazebo. Experiments using Aleph and SWI-Prolog illustrate how ILP can build explainable theories with a high performance, using a relatively small dataset and low amount of time for training. Therefore, this work serves as a proof-of-concept that ILP is a valuable method to acquire knowledge and validate heuristics for pose and shape estimation in complex bin picking scenarios.

2021

CMIID: A comprehensive medical information identifier for clinical search harmonization in Data Safe Havens

Authors
Domingues, MAP; Camacho, R; Rodrigues, PP;

Publication
JOURNAL OF BIOMEDICAL INFORMATICS

Abstract
Over the last decades clinical research has been driven by informatics changes nourished by distinct research endeavors. Inherent to this evolution, several issues have been the focus of a variety of studies: multi-location patient data access, interoperability between terminological and classification systems and clinical practice and records harmonization. Having these problems in mind, the Data Safe Haven paradigm emerged to promote a newborn architecture, better reasoning and safe and easy access to distinct Clinical Data Repositories. This study aim is to present a novel solution for clinical search harmonization within a safe environment, making use of a hybrid coding taxonomy that enables researchers to collect information from multiple repositories based on a clinical domain query definition. Results show that is possible to query multiple repositories using a single query definition based on clinical domains and the capabilities of the Unified Medical Language System, although it leads to deterioration of the framework response times. Participants of a Focus Group and a System Usability Scale questionnaire rated the framework with a median value of 72.5, indicating the hybrid coding taxonomy could be enriched with additional metadata to further improve the refinement of the results and enable the possibility of using this system as data quality tagging mechanism.

  • 20
  • 20