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Publications

Publications by Hélder Filipe Oliveira

2026

Pattern Recognition and Image Analysis - 12th Iberian Conference, IbPRIA 2025, Coimbra, Portugal, June 30 - July 3, 2025, Proceedings, Part II

Authors
Gonçalves, N; Oliveira, HP; Sánchez, JA;

Publication
IbPRIA (2)

Abstract

2026

Pattern Recognition and Image Analysis - 12th Iberian Conference, IbPRIA 2025, Coimbra, Portugal, June 30 - July 3, 2025, Proceedings, Part I

Authors
Gonçalves, N; Oliveira, HP; Sánchez, JA;

Publication
IbPRIA (1)

Abstract

2025

Toward Generalizable Radiomics Models for EGFR Mutation Prediction: A Multi-Dataset Evaluation

Authors
Pereira, M; Mendes, T; Hespanhol, V; Oliveira, HP; Pereira, T;

Publication
BIBM

Abstract
Epidermal Growth Factor Receptor (EGFR) is one of the most frequently mutated genes in lung cancer. Its mutation status characterization is crucial for personalized treatment in Non-Small-Cell Lung Cancer (NSCLC). Biopsy is the gold standard for characterizing the EGFR mutation status. However, it is an invasive time-consuming method and is often burdensome or even impractical for some patients. Therefore, it is of utmost importance to identify alternative non-invasive methods for classifying this mutation. Computed Tomography (CT) images represent a non-invasive, safer and faster method to directly characterize lung cancer. This study developed a comprehensive radiomic approach for EGFR mutation classification using CT images, in which two preprocessing strategies were compared and five machine learning algorithms were evaluated across different datasets. We analyzed two independent datasets individually and combined, implementing lung containing nodule versus bounding box around nodule preprocessing approaches. Radiomic features were extracted using PyRadiomics and selected through Principal Component Analysis (PCA) (65-95% variance thresholds) and pairwise correlation filtering. The results demonstrated that the lung with nodule strategy achieved better and more consistent performance compared to the bounding box around the nodule method. The best performance (AUC=0.780) was achieved using Random Forest with correlation filtering. The results suggest that radiomics may be a potential support tool for EGFR classification when biopsy is not feasible or recommended. This would enable safer and more efficient personalized treatment. Nevertheless, the results underscore the need for larger, diverse datasets to improve model robustness for characterizing such complex and variable information before clinical integration. © 2025 IEEE.

2026

HUydra: Full-Range Lung CT Synthesis via Multiple HU Interval Generative Modelling

Authors
Cardoso, A; Sousa, P; Pereira, T; Oliveira, HP;

Publication
CoRR

Abstract

2026

A Data Quality-Centric Approach for Predicting Radiology Report Delays

Authors
Silva, DM; Fernandes, P; Madureira, D; Freire, AM; Oliveira, HP; Araújo, J;

Publication
BIOSTEC (2)

Abstract

2026

Learning object representations through amortized inference over probabilistic programs

Authors
Silva, F; Oliveira, HP; Pereira, T;

Publication
Trans. Mach. Learn. Res.

Abstract
The recent developments of modern probabilistic programming languages have enabled the combination of pattern recognition engines implemented by neural networks to guide inference over explanatory factors written as symbols in probabilistic programs. We argue that learning to invert fixed generative programs, instead of learned ones, places stronger restrictions on the representations learned by feature extraction networks, which reduces the space of latent hypotheses and enhances training efficiency. To empirically demonstrate this, we investigate a neurosymbolic object-centric representation learning approach that combines a slot-based neural module optimized via inference compilation to invert a prior generative program of scene generation. By amortizing the search over posterior hypotheses, we demonstrate that approximate inference using data-driven sequential Monte Carlo methods achieves competitive results when compared to state-of-the-art fully neural baselines while requiring several times fewer training steps. © 2026, Transactions on Machine Learning Research. All rights reserved.

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