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Publications

Publications by CRACS

2013

A preliminary investigation into predictive models for adverse drug events

Authors
Davis, J; Costa, VS; Peissig, P; Caldwell, M; Page, D;

Publication
AAAI Workshop - Technical Report

Abstract
Adverse drug events are a leading cause of danger and cost in health care. We could reduce both the danger and the cost if we had accurate models to predict, at prescription time for each drug, which patients are most at risk for known adverse reactions to that drug, such as myocardial infarction (MI, or "heart attack") if given a Cox2 inhibitor, angioedema if given an ACE inhibitor, or bleeding if given an anticoagulant such as Warfarin. We address this task for the specific case of Cox2 inhibitors, a type of non-steroidal anti-inflammatory drug (NSAID) or pain reliever that is easier on the gastrointestinal system than most NSAIDS. Because of the MI adverse drug reaction, some but not all very effective Cox2 inhibitors were removed from the market. Specifically, we use machine learning to predict which patients on a Cox2 inhibitor would suffer an MI. An important issue for machine learning is that we do not know which of these patients might have suffered an MI even without the drug. To begin to make some headway on this important problem, we compare our predictive model for MI for patients on Cox2 inhibitors against a more general model for predicting MI among a broader population not on Cox2 inhibitors. Copyright

2013

CrowdTargeting: Making Crowds More Personal

Authors
Costa, J; Silva, C; Ribeiro, B; Antunes, M;

Publication
2013 8TH INTERNATIONAL WORKSHOP ON SEMANTIC AND SOCIAL MEDIA ADAPTATION AND PERSONALIZATION (SMAP 2013)

Abstract
Crowdsourcing is a bubbling research topic that has the potential to be applied in numerous online and social scenarios. It consists on obtaining services or information by soliciting contributions from a large group of people. However, the question of defining the appropriate scope of a crowd to tackle each scenario is still open. In this work we compare two approaches to define the scope of a crowd in a classification problem, casted as a recommendation system. We propose a similarity measure to determine the closeness of a specific user to each crowd contributor and hence to define the appropriate crowd scope. We compare different levels of customization using crowd-based information, allowing non-experts classification by crowds to be tuned to substitute the user profile definition. Results on a real recommendation data set show the potential of making crowds more personal, i.e. of tuning the crowd to the crowdtarget.

2013

Customized crowds and active learning to improve classification

Authors
Costa, J; Silva, C; Antunes, M; Ribeiro, B;

Publication
EXPERT SYSTEMS WITH APPLICATIONS

Abstract
Traditional classification algorithms can be limited in their performance when a specific user is targeted. User preferences, e.g. in recommendation systems, constitute a challenge for learning algorithms. Additionally, in recent years user's interaction through crowdsourcing has drawn significant interest, although its use in learning settings is still underused. In this work we focus on an active strategy that uses crowd-based non-expert information to appropriately tackle the problem of capturing the drift between user preferences in a recommendation system. The proposed method combines two main ideas: to apply active strategies for adaptation to each user; to implement crowdsourcing to avoid excessive user feedback. A similitude technique is put forward to optimize the choice of the more appropriate similitude-wise crowd, under the guidance of basic user feedback. The proposed active learning framework allows non-experts classification performed by crowds to be used to define the user profile, mitigating the labeling effort normally requested to the user. The framework is designed to be generic and suitable to be applied, to different' scenarios, whilst customizable for each specific user. A case study on humor classification scenario is used to demonstrate experimentally that the approach can improve baseline active results.

2013

Defining Semantic Meta-hashtags for Twitter Classification

Authors
Costa, J; Silva, C; Antunes, M; Ribeiro, B;

Publication
ADAPTIVE AND NATURAL COMPUTING ALGORITHMS, ICANNGA 2013

Abstract
Given the wide spread of social networks, research efforts to retrieve information using tagging from social networks communications have increased. In particular, in Twitter social network, hashtags are widely used to define a shared context for events or topics. While this is a common practice often the hashtags freely introduced by the user become easily biased. In this paper, we propose to deal with this bias defining semantic meta-hashtags by clustering similar messages to improve the classification. First, we use the user-defined hashtags as the Twitter message class labels. Then, we apply the meta-hashtag approach to boost the performance of the message classification. The meta-hashtag approach is tested in a Twitter-based dataset constructed by requesting public tweets to the Twitter API. The experimental results yielded by comparing a baseline model based on user-defined hashtags with the clustered meta-hashtag approach show that the overall classification is improved. It is concluded that by incorporating semantics in the meta-hashtag model can have impact in different applications, e.g. recommendation systems, event detection or crowdsourcing.

2013

Knowledge on Heart Condition of Children based on Demographic and Physiological Features

Authors
Ferreira, P; Vinhoza, TTV; Castro, A; Mourato, F; Tavares, T; Mattos, S; Dutra, I; Coimbra, M;

Publication
2013 IEEE 26TH INTERNATIONAL SYMPOSIUM ON COMPUTER-BASED MEDICAL SYSTEMS (CBMS)

Abstract
We evaluated a population of 7199 children between 2 and 19 years old to study the relations between the observed demographic and physiological features in the occurrence of a pathological/non-pathological heart condition. The data was collected at the Real Hospital Portugues, Pernambuco, Brazil, We performed a feature importance study, with the aim of categorizing the most relevant variables, indicative of abnormalities. Results show that second heart sound, weight, heart rate, height and secondary reason for consultation are important features, but not nearly as decisive as the presence of heart murmurs. Quantitatively speaking. systolic murmurs and a hyperphonetic second heart sound increase the odds of having a pathology by a factor of 320 and 6, respectively.

2013

Using machine learning to identify benign cases with non-definitive biopsy

Authors
Kuusisto, F; Dutra, I; Nassif, H; Wu, Y; Klein, ME; Neuman, HB; Shavlik, J; Burnside, ES;

Publication
2013 IEEE 15th International Conference on e-Health Networking, Applications and Services, Healthcom 2013

Abstract
When mammography reveals a suspicious finding, a core needle biopsy is usually recommended. In 5% to 15% of these cases, the biopsy diagnosis is non-definitive and a more invasive surgical excisional biopsy is recommended to confirm a diagnosis. The majority of these cases will ultimately be proven benign. The use of excisional biopsy for diagnosis negatively impacts patient quality of life and increases costs to the healthcare system. In this work, we employ a multi-relational machine learning approach to predict when a patient with a non-definitive core needle biopsy diagnosis need not undergo an excisional biopsy procedure because the risk of malignancy is low. © 2013 IEEE.

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