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Publications

Publications by BIO

2014

Cardiovascular risk analysis by means of pulse morphology and clustering methodologies

Authors
Almeida, VG; Borba, J; Pereira, HC; Pereira, T; Correia, C; Pego, M; Cardoso, J;

Publication
COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

Abstract
The purpose of this study was the development of a clustering methodology to deal with arterial pressure waveform (APW) parameters to be used in the cardiovascular risk assessment. One hundred sixteen subjects were monitored and divided into two groups. The first one (23 hypertensive subjects) was analyzed using APW and biochemical parameters, while the remaining 93 healthy subjects were only evaluated through APW parameters. The expectation maximization (EM) and k-means algorithms were used in the cluster analysis, and the risk scores (the Framingham Risk Score (FRS), the Systematic COronary Risk Evaluation (SCORE) project, the Assessing cardiovascular risk using Scottish Intercollegiate Guidelines Network (ASSIGN) and the PROspective Cardiovascular munster (PROCAM)), commonly used in clinical practice were selected to the cluster risk validation. The result from the clustering risk analysis showed a very significant correlation with ASSIGN (r = 0.582, p < 0.01) and a significant correlation with FRS (r = 0.458, p < 0.05). The results from the comparison of both groups also allowed to identify the cluster with higher cardiovascular risk in the healthy group. These results give new insights to explore this methodology in future scoring trials.

2014

Automatic detection of the carotid lumen axis in B-mode ultrasound images

Authors
Rocha, R; Silva, J; Campilho, A;

Publication
COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

Abstract
A new approach is introduced for the automatic detection of the lumen axis of the common carotid artery in B-mode ultrasound images. The image is smoothed using a Gaussian filter and then a dynamic programming scheme extracts the dominant paths of local minima of the intensity and the dominant paths of local maxima of the gradient magnitude with the gradient pointing downwards. Since these paths are possible estimates of the lumen axis and the far wall of a blood vessel, respectively, they are grouped together into pairs. Then, a pattern of two features is computed from each pair of paths and used as input to a linear discriminant classifier in order to select the pair of paths that correspond to the common carotid artery. The estimated lumen axis is the path of local minima of the intensity that belongs to the selected pair of paths. The proposed method is suited to real time processing, no user interaction is required and the number of parameters is minimal and easy to determine. The validation was performed using two datasets, with a total of 199 images, and has shown a success rate of 99.5% (100% if only the carotid regions for which a ground truth is available are considered). The datasets have a large diversity of images, including cases of arteries with plaque and images with heavy noise, text or other graphical markings inside the artery region.

2014

Monkeys time their pauses of movement and not their movement-kinematics during a synchronization-continuation rhythmic task

Authors
Donnet, S; Bartolo, R; Fernandes, JM; Silva Cunha, JPS; Prado, L; Merchant, H;

Publication
JOURNAL OF NEUROPHYSIOLOGY

Abstract
A critical question in tapping behavior is to understand whether the temporal control is exerted on the duration and trajectory of the downward-upward hand movement or on the pause between hand movements. In the present study, we determined the duration of both the movement execution and pauses of monkeys performing a synchronization-continuation task (SCT), using the speed profile of their tapping behavior. We found a linear increase in the variance of pause-duration as a function of interval, while the variance of the motor implementation was relatively constant across intervals. In fact, 96% of the variability of the duration of a complete tapping cycle (pause + movement) was due to the variability of the pause duration. In addition, we performed a Bayesian model selection to determine the effect of interval duration (450 -1,000 ms), serial-order (1-6 produced intervals), task phase (sensory cued or internally driven), and marker modality (auditory or visual) on the duration of the movement-pause and tapping movement. The results showed that the most important parameter used to successfully perform the SCT was the control of the pause duration. We also found that the kinematics of the tapping movements was concordant with a stereotyped ballistic control of the hand pressing the push-button. The present findings support the idea that monkeys used an explicit timing strategy to perform the SCT, where a dedicated timing mechanism controlled the duration of the pauses of movement, while also triggered the execution of fixed movements across each interval of the rhythmic sequence.

2014

Segmentation of the vascular network of the Retina

Authors
Mendonça A.M.; Dashtbozorg B.; Campilho A.;

Publication
Image Analysis and Modeling in Ophthalmology

Abstract
The retina is a unique region where the vascular condition can be observed in vivo. It is a window to the systemic vasculature, as the retinal blood vessels are exposed to the same stresses and pathologies as the whole vascular system. The retinal vasculature status can be evaluated with high-resolution eye fundus color images, and variations in the retinal microcirculation can be used as an indicator of a lesion in the cerebral microvasculature. The features measured on these images can characterize retinal arteriolar narrowing, which is a marker of hypertension, or diabetic retinopathy (DR).

2014

ABrIL - Advanced Brain Imaging Lab.: a cloud based computation environment for cooperative neuroimaging projects

Authors
Neves Tafula, SMN; da Silva, NM; Rozanski, VE; Silva Cunha, JPS;

Publication
2014 36TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY (EMBC)

Abstract
Neuroscience is an increasingly multidisciplinary and highly cooperative field where neuroimaging plays an important role. Neuroimaging rapid evolution is demanding for a growing number of computing resources and skills that need to be put in place at every lab. Typically each group tries to setup their own servers and workstations to support their neuroimaging needs, having to learn from Operating System management to specific neuroscience software tools details before any results can be obtained from each setup. This setup and learning process is replicated in every lab, even if a strong collaboration among several groups is going on. In this paper we present a new cloud service model - Brain Imaging Application as a Service (BiAaaS) - and one of its implementation - Advanced Brain Imaging Lab (ABrIL) - in the form of an ubiquitous virtual desktop remote infrastructure that offers a set of neuroimaging computational services in an interactive neuroscientist-friendly graphical user interface (GUI). This remote desktop has been used for several multi-institution cooperative projects with different neuroscience objectives that already achieved important results, such as the contribution to a high impact paper published in the January issue of the Neuroimage journal. The ABrIL system has shown its applicability in several neuroscience projects with a relatively low-cost, promoting truly collaborative actions and speeding up project results and their clinical applicability.

2014

Characterization of an Acoustic Based Device for Local Arterial Stiffness Assessment

Authors
Pereira, HC; Contente, M; Almeida, V; Pereira, T; Simoes, JB; Cardoso, J; Correia, C; Pereira, HC; Simoes, JB; Maldonado, J; Pereira, T;

Publication
BIOMEDICAL ENGINEERING SYSTEMS AND TECHNOLOGIES (BIOSTEC 2013)

Abstract
Arterial stiffness, recognized as an independent predictor of cardiovascular events, can be assessed non-invasively by regional and local methods. The present work proposes and describes a novel and low-cost device, based on a double-headed acoustic probe (AP), to assess local arterial stiffness, by means of pulse wave velocity (PWV) measurements. Local PWV is measured over the carotid artery and relies on the determination of the time delay between the signals acquired simultaneously by both acoustic sensors, placed at a fixed distance. The AP was characterized with dedicated test setups, in order to evaluate its performance concerning waveform analysis, repeatability, crosstalk effect and time resolution. Results show that AP signals are repeatable and crosstalk effect do not interfere with its time resolution, when the cross-correlation algorithm for time delay estimation is used. The AP's effectiveness in measuring higher PWV (14 m/s), with a relative error less than 5 %, when using two uncoupled APs, was also demonstrated. Finally, its clinical feasibility was investigated, in a set of 17 healthy subjects, in which local PWV and other hemodynamic parameters were measured. Carotid PWV yielded a mean value of 2.96 +/- 1.08 m/s that is in agreement with the values obtained in other reference studies.

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