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Publications

Publications by HASLab

2026

Paraconsistent Reactive Graphs

Authors
Cunha, J; Madeira, A; Barbosa, LS;

Publication
SOFTWARE ENGINEERING AND FORMAL METHODS. SEFM 2024 COLLOCATED WORKSHOPS

Abstract
This paper introduces Paraconsistent Reactive Graphs, as an extension of Reactive graphs that incorporates paraconsistency into the ground edges to address vagueness and inconsistency within dynamic systems. By assigning pairs of truth values to ground edges, this framework captures the uncertainty and contradictions stemming from incomplete or conflicting information. We explore the semantics of these graphs and provide a practical example to illustrate the proposed approach.

2026

Exploiting Trusted Execution Environments and Distributed Computation for Genomic Association Tests

Authors
Brito, CV; Ferreira, PG; Paulo, JT;

Publication
IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS

Abstract
Breakthroughs in sequencing technologies led to an exponential growth of genomic data, providing novel biological insights and therapeutic applications. However, analyzing large amounts of sensitive data raises key data privacy concerns, specifically when the information is outsourced to untrusted third-party infrastructures for data storage and processing (e.g., cloud computing). We introduce Gyosa, a secure and privacy-preserving distributed genomic analysis solution. By leveraging trusted execution environments (TEEs), Gyosa allows users to confidentially delegate their GWAS analysis to untrusted infrastructures. Gyosa implements a computation partitioning scheme that reduces the computation done inside the TEEs while safeguarding the users' genomic data privacy. By integrating this security scheme in Glow, Gyosa provides a secure and distributed environment that facilitates diverse GWAS studies. The experimental evaluation validates the applicability and scalability of Gyosa, reinforcing its ability to provide enhanced security guarantees.

2026

Stochastic dynamic inventory-routing: A comprehensive review

Authors
Maia, F; Figueira, G; Neves-Moreira, F;

Publication
COMPUTERS & OPERATIONS RESEARCH

Abstract
The stochastic dynamic inventory-routing problem (SDIRP) is a fundamental problem within supply chain operations that integrates inventory management and vehicle routing while handling the stochastic and dynamic nature of exogenous factors unveiled over time, such as customer demands, inventory supply and travel times. While practical applications require dynamic and stochastic decision-making, research in this field has only recently experienced significant growth, with most inventory-routing literature focusing on static variants. This paper reviews the current state of research on SDIRPs, identifying critical gaps and highlighting emerging trends in problem settings and decision policies. We extend the existing inventory-routing taxonomies by incorporating additional problem characteristics to better align models with real-world contexts. As a result, we highlight the need to account for further sources of uncertainty, multiple-supplier networks, perishability, multiple objectives, and pickup and delivery operations. We further categorize each study based on its policy design, investigating how different problem aspects shape decision policies. To conclude, we emphasize that large-scale and real-time problems require more attention and can benefit from decomposition approaches and learning-based methods.

2026

A framework for supporting the reproducibility of computational experiments in multiple scientific domains

Authors
Costa, L; Barbosa, S; Cunha, J;

Publication
Future Gener. Comput. Syst.

Abstract
In recent years, the research community, but also the general public, has raised serious questions about the reproducibility and replicability of scientific work. Since many studies include some kind of computational work, these issues are also a technological challenge, not only in computer science, but also in most research domains. Computational replicability and reproducibility are not easy to achieve due to the variety of computational environments that can be used. Indeed, it is challenging to recreate the same environment via the same frameworks, code, programming languages, dependencies, and so on. We propose a framework, known as SciRep, that supports the configuration, execution, and packaging of computational experiments by defining their code, data, programming languages, dependencies, databases, and commands to be executed. After the initial configuration, the experiments can be executed any number of times, always producing exactly the same results. Our approach allows the creation of a reproducibility package for experiments from multiple scientific fields, from medicine to computer science, which can be re-executed on any computer. The produced package acts as a capsule, holding absolutely everything necessary to re-execute the experiment. To evaluate our framework, we compare it with three state-of-the-art tools and use it to reproduce 18 experiments extracted from published scientific articles. With our approach, we were able to execute 16 (89%) of those experiments, while the others reached only 61%, thus showing that our approach is effective. Moreover, all the experiments that were executed produced the results presented in the original publication. Thus, SciRep was able to reproduce 100% of the experiments it could run. © 2025 The Authors

2026

Data Spaces as Enablers of Digital Twin Ecosystems: Challenges and Requirements

Authors
Chaves, AC; Alonso, AN; Soares, AL;

Publication
ADVANCES IN PRODUCTION MANAGEMENT SYSTEMS. CYBER-PHYSICAL-HUMAN PRODUCTION SYSTEMS: HUMAN-AI COLLABORATION AND BEYOND, APMS 2025, PT V

Abstract
The increasing adoption of the Digital Twin concept and technology for managing complex physical assets has led to the emergence of Digital Twin Ecosystems, where interconnected digital twins generate additional value. However, ensuring seamless data sharing and interoperability among diverse systems presents significant challenges. Although research on digital twin architectures has advanced, gaps remain in addressing data governance, security, and stakeholders' trust. This study performs a comprehensive literature review to investigate architectural solutions to overcome challenges in digital twin ecosystems. The findings identify key requirements such as interoperability, governance, and data management, emphasizing the role of Data Spaces as enablers of secure data sharing. By structuring the requirements for digital twin ecosystem architectures, this paper identifies gaps suggesting future research on scalable and sustainable digital twin ecosystem implementations. These insights are expected to contribute to the development of frameworks that integrate technical advances with organizational and regulatory considerations, ultimately fostering the adoption of digital twin ecosystems across industries.

2026

Preface

Authors
Proença, J; Fervari, R; Martins, MA; Kahle, R; Pluck, G;

Publication
Lecture Notes in Computer Science

Abstract
[No abstract available]

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