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Publications

Publications by CTM

2023

A simple machine learning-based framework for faster multi-scale simulations of path-independent materials at large strains

Authors
Carneiro, AMC; Alves, AFC; Coelho, RPC; Cardoso, JS; Pires, FMA;

Publication
FINITE ELEMENTS IN ANALYSIS AND DESIGN

Abstract
Coupled multi-scale finite element analyses have gained traction over the last years due to the increasing available computational resources. Nevertheless, in the pursuit of accurate results within a reasonable time frame, replacing these high-fidelity micromechanical simulations with reduced-order data-driven models has been explored recently by the modelling community. In this work, two classes of machine learning models are trained for a porous hyperelastic microstructure to predict (i) whether the microscopic equilibrium problem is likely to fail and (ii) the stress-strain response. The former may be used to identify critical macroscopic points where one may fall back to the high-fidelity analysis and possibly apply convergence bowl-widening techniques. For the latter, both a linear regression with polynomial features and artificial Neural Networks have been used, and the required stress-strain derivatives for solving the equilibrium problem have been derived analytically. A weight regularisation is introduced to stabilise the tangent operator and several strategies are discussed for imposing null stresses in undeformed configurations for both regression models. The regression techniques, here analysed exclusively in the context of porous hyperelastic materials, evidence very promising prospects to accelerate multi-scale analyses of solids under large deformation.

2023

Two-Stage Framework for Faster Semantic Segmentation

Authors
Cruz, R; Silva, DTE; Goncalves, T; Carneiro, D; Cardoso, JS;

Publication
SENSORS

Abstract
Semantic segmentation consists of classifying each pixel according to a set of classes. Conventional models spend as much effort classifying easy-to-segment pixels as they do classifying hard-to-segment pixels. This is inefficient, especially when deploying to situations with computational constraints. In this work, we propose a framework wherein the model first produces a rough segmentation of the image, and then patches of the image estimated as hard to segment are refined. The framework is evaluated in four datasets (autonomous driving and biomedical), across four state-of-the-art architectures. Our method accelerates inference time by four, with additional gains for training time, at the cost of some output quality.

2023

Deep Minutiae Fingerprint Extraction Using Equivariance Priors

Authors
Gouveia, M; Castro, E; Rebelo, A; Cardoso, JS; Patrão, B;

Publication
BIOSIGNALS

Abstract

2023

CoNIC Challenge: Pushing the Frontiers of Nuclear Detection, Segmentation, Classification and Counting

Authors
Graham, S; Vu, QD; Jahanifar, M; Weigert, M; Schmidt, U; Zhang, W; Zhang, J; Yang, S; Xiang, J; Wang, X; Rumberger, JL; Baumann, E; Hirsch, P; Liu, L; Hong, C; Avilés Rivero, AI; Jain, A; Ahn, H; Hong, Y; Azzuni, H; Xu, M; Yaqub, M; Blache, MC; Piégu, B; Vernay, B; Scherr, T; Böhland, M; Löffler, K; Li, J; Ying, W; Wang, C; Kainmueller, D; Schönlieb, CB; Liu, S; Talsania, D; Meda, Y; Mishra, P; Ridzuan, M; Neumann, O; Schilling, MP; Reischl, M; Mikut, R; Huang, B; Chien, HC; Wang, CP; Lee, CY; Lin, HK; Liu, Z; Pan, X; Han, C; Cheng, J; Dawood, M; Deshpande, S; Saad Bashir, RM; Shephard, A; Costa, P; Nunes, JD; Campilho, A; Cardoso, JS; S, HP; Puthussery, D; G, DR; V, JC; Zhang, Y; Fang, Z; Lin, Z; Zhang, Y; Lin, C; Zhang, L; Mao, L; Wu, M; Vi Vo, TT; Kim, SH; Lee, T; Kondo, S; Kasai, S; Dumbhare, P; Phuse, V; Dubey, Y; Jamthikar, A; Le Vuong, TT; Kwak, JT; Ziaei, D; Jung, H; Miao, T; Snead, DRJ; Ahmed Raza, SE; Minhas, F; Rajpoot, NM;

Publication
CoRR

Abstract

2023

Annotating for Artificial Intelligence Applications in Digital Pathology: A Practical Guide for Pathologists and Researchers

Authors
Montezuma, D; Oliveira, SP; Neto, PC; Oliveira, D; Monteiro, A; Cardoso, JS; Macedo-Pinto, I;

Publication
MODERN PATHOLOGY

Abstract
Training machine learning models for artificial intelligence (AI) applications in pathology often requires extensive annotation by human experts, but there is little guidance on the subject. In this work, we aimed to describe our experience and provide a simple, useful, and practical guide addressing annotation strategies for AI development in computational pathology. Annotation methodology will vary significantly depending on the specific study's objectives, but common difficulties will be present across different settings. We summarize key aspects and issue guiding principles regarding team interaction, ground-truth quality assessment, different annotation types, and available software and hardware options and address common difficulties while annotating. This guide was specifically designed for pathology annotation, intending to help pathologists, other researchers, and AI developers with this process.(c) 2022 THE AUTHORS. Published by Elsevier Inc. on behalf of the United States & Canadian Academy of Pathology. This is an open access article under the CC BY-NC-ND license (http://creativecommons. org/licenses/by-nc-nd/4.0/).

2023

Author Correction: Computer-aided diagnosis through medical image retrieval in radiology (Scientific Reports, (2022), 12, 1, (20732), 10.1038/s41598-022-25027-2)

Authors
Silva, W; Gonçalves, T; Härmä, K; Schröder, E; Obmann, VC; Barroso, MC; Poellinger, A; Reyes, M; Cardoso, JS;

Publication
Scientific Reports

Abstract
The original version of this Article contained an error in the Acknowledgements section. “This work was partially funded by the Project TAMI—Transparent Artificial Medical Intelligence (NORTE- 01-0247-FEDER-045905) financed by ERDF—European Regional Fund through the North Portugal Regional Operational Program—NORTE 2020 and by the Portuguese Foundation for Science and Technology—FCT under the CMU—Portugal International Partnership, and also by the Portuguese Foundation for Science and Technology—FCT within PhD grants SFRH/BD/139468/2018 and 2020.06434.BD. The authors thank the Swiss National Science Foundation grant number 198388, as well as the Lindenhof foundation for their grant support.” now reads: “This work was supported by National Funds through the Portuguese Funding Agency, FCT–Foundation for Science and Technology Portugal, under Project LA/P/0063/2020, and also by the Portuguese Foundation for Science and Technology - FCT within PhD grants SFRH/BD/139468/2018 and 2020.06434.BD. The authors thank the Swiss National Science Foundation grant number 198388, as well as the Lindenhof foundation for their grant support.” The original Article has been corrected. © The Author(s) 2023.

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