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Publications

Publications by CTM

2024

Latent diffusion models for Privacy-preserving Medical Case-based Explanations

Authors
Campos, F; Petrychenko, L; Teixeira, LF; Silva, W;

Publication
EXPLIMED@ECAI

Abstract
Deep-learning techniques can improve the efficiency of medical diagnosis while challenging human experts’ accuracy. However, the rationale behind these classifier’s decisions is largely opaque, which is dangerous in sensitive applications such as healthcare. Case-based explanations explain the decision process behind these mechanisms by exemplifying similar cases using previous studies from other patients. Yet, these may contain personally identifiable information, which makes them impossible to share without violating patients’ privacy rights. Previous works have used GANs to generate anonymous case-based explanations, which had limited visual quality. We solve this issue by employing a latent diffusion model in a three-step procedure: generating a catalogue of synthetic images, removing the images that closely resemble existing patients, and using this anonymous catalogue during an explanation retrieval process. We evaluate the proposed method on the MIMIC-CXR-JPG dataset and achieve explanations that simultaneously have high visual quality, are anonymous, and retain their explanatory value.

2024

Finding Patterns in Ambiguity: Interpretable Stress Testing in the Decision Boundary

Authors
Gomes, I; Teixeira, LF; van Rijn, JN; Soares, C; Restivo, A; Cunha, L; Santos, M;

Publication
CoRR

Abstract

2024

Unsupervised Contrastive Analysis for Salient Pattern Detection using Conditional Diffusion Models

Authors
Patrício, C; Barbano, CA; Fiandrotti, A; Renzulli, R; Grangetto, M; Teixeira, LF; Neves, JC;

Publication
CoRR

Abstract
Contrastive Analysis (CA) regards the problem of identifying patterns in images that allow distinguishing between a background (BG) dataset (i.e. healthy subjects) and a target (TG) dataset (i.e. unhealthy subjects). Recent works on this topic rely on variational autoencoders (VAE) or contrastive learning strategies to learn the patterns that separate TG samples from BG samples in a supervised manner. However, the dependency on target (unhealthy) samples can be challenging in medical scenarios due to their limited availability. Also, the blurred reconstructions of VAEs lack utility and interpretability. In this work, we redefine the CA task by employing a self-supervised contrastive encoder to learn a latent representation encoding only common patterns from input images, using samples exclusively from the BG dataset during training, and approximating the distribution of the target patterns by leveraging data augmentation techniques. Subsequently, we exploit state-of-the-art generative methods, i.e. diffusion models, conditioned on the learned latent representation to produce a realistic (healthy) version of the input image encoding solely the common patterns. Thorough validation on a facial image dataset and experiments across three brain MRI datasets demonstrate that conditioning the generative process of state-of-the-art generative methods with the latent representation from our self-supervised contrastive encoder yields improvements in the generated image quality and in the accuracy of image classification. The code is available at https://github.com/CristianoPatricio/unsupervised-contrastive-cond-diff.

2024

TOWARDS CONCEPT-BASED INTERPRETABILITY OF SKIN LESION DIAGNOSIS USING VISION-LANGUAGE MODELS

Authors
Patricio, C; Teixeira, LF; Neves, JC;

Publication
IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING, ISBI 2024

Abstract
Concept-based models naturally lend themselves to the development of inherently interpretable skin lesion diagnosis, as medical experts make decisions based on a set of visual patterns of the lesion. Nevertheless, the development of these models depends on the existence of concept-annotated datasets, whose availability is scarce due to the specialized knowledge and expertise required in the annotation process. In this work, we show that vision-language models can be used to alleviate the dependence on a large number of concept-annotated samples. In particular, we propose an embedding learning strategy to adapt CLIP to the downstream task of skin lesion classification using concept-based descriptions as textual embeddings. Our experiments reveal that vision-language models not only attain better accuracy when using concepts as textual embeddings, but also require a smaller number of concept-annotated samples to attain comparable performance to approaches specifically devised for automatic concept generation.

2024

Explainable Deep Learning Methods in Medical Image Classification: A Survey

Authors
Patrício, C; Neves, C; Teixeira, F;

Publication
ACM COMPUTING SURVEYS

Abstract
The remarkable success of deep learning has prompted interest in its application to medical imaging diagnosis. Even though state-of-the-art deep learning models have achieved human-level accuracy on the classification of different types of medical data, these models are hardly adopted in clinical workflows, mainly due to their lack of interpretability. The black-box nature of deep learning models has raised the need for devising strategies to explain the decision process of these models, leading to the creation of the topic of eXplainable Artificial Intelligence (XAI). In this context, we provide a thorough survey of XAI applied to medical imaging diagnosis, including visual, textual, example-based and concept-based explanation methods. Moreover, this work reviews the existing medical imaging datasets and the existing metrics for evaluating the quality of the explanations. In addition, we include a performance comparison among a set of report generation-based methods. Finally, the major challenges in applying XAI to medical imaging and the future research directions on the topic are discussed.

2024

A Transition Towards Virtual Representations of Visual Scenes

Authors
Pereira, A; Carvalho, P; Côrte Real, L;

Publication
Advances in Internet of Things & Embedded Systems

Abstract
We propose a unified architecture for visual scene understanding, aimed at overcoming the limitations of traditional, fragmented approaches in computer vision. Our work focuses on creating a system that accurately and coherently interprets visual scenes, with the ultimate goal to provide a 3D virtual representation, which is particularly useful for applications in virtual and augmented reality. By integrating various visual and semantic processing tasks into a single, adaptable framework, our architecture simplifies the design process, ensuring a seamless and consistent scene interpretation. This is particularly important in complex systems that rely on 3D synthesis, as the need for precise and semantically coherent scene descriptions keeps on growing. Our unified approach addresses these challenges, offering a flexible and efficient solution. We demonstrate the practical effectiveness of our architecture through a proof-of-concept system and explore its potential in various application domains, proving its value in advancing the field of computer vision.

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