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Publications

Publications by CRIIS

2023

Migration of a stock management application in the healthcare industry to a Web/Mobile environment: A project report

Authors
Machado, C; Cunha, A; Gouveia, AJ;

Publication
Procedia Computer Science

Abstract

2023

Glaucoma Detection using Convolutional Neural Networks for Mobile Use

Authors
Esengönöl, M; Cunha, A;

Publication
Procedia Computer Science

Abstract

2023

Colonoscopic Polyp Detection with Deep Learning Assist

Authors
Neto, A; Couto, D; Coimbra, MT; Cunha, A;

Publication
VISIGRAPP (4: VISAPP)

Abstract
Colorectal cancer is the third most common cancer and the second cause of cancer-related deaths in the world. Colonoscopic surveillance is extremely important to find cancer precursors such as adenomas or serrated polyps. Identifying small or flat polyps can be challenging during colonoscopy and highly dependent on the colonoscopist's skills. Deep learning algorithms can enable improvement of polyp detection rate and consequently assist to reduce physician subjectiveness and operation errors. This study aims to compare YOLO object detection architecture with self-attention models. In this study, the Kvasir-SEG polyp dataset, composed of 1000 colonoscopy annotated still images, were used to train (700 images) and validate (300images) the performance of polyp detection algorithms. Well-defined architectures such as YOLOv4 and different YOLOv5 models were compared with more recent algorithms that rely on self-attention mechanisms, namely the DETR model, to understand which technique can be more helpful and reliable in clinical practice. In the end, the YOLOv5 proved to be the model achieving better results for polyp detection with 0.81 mAP, however, the DETR had 0.80 mAP proving to have the potential of reaching similar performances when compared to more well-established architectures.

2023

Deep Learning Models for the Classification of Crops in Aerial Imagery: A Review

Authors
Teixeira, I; Morais, R; Sousa, JJ; Cunha, A;

Publication
AGRICULTURE-BASEL

Abstract
In recent years, the use of remote sensing data obtained from satellite or unmanned aerial vehicle (UAV) imagery has grown in popularity for crop classification tasks such as yield prediction, soil classification or crop mapping. The ready availability of information, with improved temporal, radiometric, and spatial resolution, has resulted in the accumulation of vast amounts of data. Meeting the demands of analysing this data requires innovative solutions, and artificial intelligence techniques offer the necessary support. This systematic review aims to evaluate the effectiveness of deep learning techniques for crop classification using remote sensing data from aerial imagery. The reviewed papers focus on a variety of deep learning architectures, including convolutional neural networks (CNNs), long short-term memory networks, transformers, and hybrid CNN-recurrent neural network models, and incorporate techniques such as data augmentation, transfer learning, and multimodal fusion to improve model performance. The review analyses the use of these techniques to boost crop classification accuracy by developing new deep learning architectures or by combining various types of remote sensing data. Additionally, it assesses the impact of factors like spatial and spectral resolution, image annotation, and sample quality on crop classification. Ensembling models or integrating multiple data sources tends to enhance the classification accuracy of deep learning models. Satellite imagery is the most commonly used data source due to its accessibility and typically free availability. The study highlights the requirement for large amounts of training data and the incorporation of non-crop classes to enhance accuracy and provide valuable insights into the current state of deep learning models and datasets for crop classification tasks.

2023

Special Issue on Novel Applications of Artificial Intelligence in Medicine and Health

Authors
Pereira, T; Cunha, A; Oliveira, HP;

Publication
APPLIED SCIENCES-BASEL

Abstract
Artificial Intelligence (AI) is one of the big hopes for the future of a positive revolution in the use of medical data to improve clinical routine and personalized medicine [...]

2023

Lung CT image synthesis using GANs

Authors
Mendes, J; Pereira, T; Silva, F; Frade, J; Morgado, J; Freitas, C; Negrao, E; de Lima, BF; da Silva, MC; Madureira, AJ; Ramos, I; Costa, JL; Hespanhol, V; Cunha, A; Oliveira, HP;

Publication
EXPERT SYSTEMS WITH APPLICATIONS

Abstract
Biomedical engineering has been targeted as a potential research candidate for machine learning applications, with the purpose of detecting or diagnosing pathologies. However, acquiring relevant, high-quality, and heterogeneous medical datasets is challenging due to privacy and security issues and the effort required to annotate the data. Generative models have recently gained a growing interest in the computer vision field due to their ability to increase dataset size by generating new high-quality samples from the initial set, which can be used as data augmentation of a training dataset. This study aimed to synthesize artificial lung images from corresponding positional and semantic annotations using two generative adversarial networks and databases of real computed tomography scans: the Pix2Pix approach that generates lung images from the lung segmentation maps; and the conditional generative adversarial network (cCGAN) approach that was implemented with additional semantic labels in the generation process. To evaluate the quality of the generated images, two quantitative measures were used: the domain-specific Frechet Inception Distance and Structural Similarity Index. Additionally, an expert assessment was performed to measure the capability to distinguish between real and generated images. The assessment performed shows the high quality of synthesized images, which was confirmed by the expert evaluation. This work represents an innovative application of GAN approaches for medical application taking into consideration the pathological findings in the CT images and the clinical evaluation to assess the realism of these features in the generated images.

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