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Publications

Publications by Jaime Cardoso

2024

Endpoint Detection in Breast Images for Automatic Classification of Breast Cancer Aesthetic Results

Authors
Freitas, N; Veloso, C; Mavioso, C; Cardoso, MJ; Oliveira, HP; Cardoso, JS;

Publication
Artificial Intelligence and Imaging for Diagnostic and Treatment Challenges in Breast Care - First Deep Breast Workshop, Deep-Breath 2024, Held in Conjunction with MICCAI 2024, Marrakesh, Morocco, October 10, 2024, Proceedings

Abstract
Breast cancer is the most common type of cancer in women worldwide. Because of high survival rates, there has been an increased interest in patient Quality of Life after treatment. Aesthetic results play an important role in this aspect, as these treatments can leave a mark on a patient’s self-image. Despite that, there are no standard ways of assessing aesthetic outcomes. Commonly used software such as BCCT.core or BAT require the manual annotation of keypoints, which makes them time-consuming for clinical use and can lead to result variability depending on the user. Recently, there have been attempts to leverage both traditional and Deep Learning algorithms to detect keypoints automatically. In this paper, we compare several methods for the detection of Breast Endpoints across two datasets. Furthermore, we present an extended evaluation of using these models as input for full contour prediction and aesthetic evaluation using the BCCT.core software. Overall, the YOLOv9 model, fine-tuned for this task, presents the best results considering both accuracy and usability, making this architecture the best choice for this application. The main contribution of this paper is the development of a pipeline for full breast contour prediction, which reduces clinician workload and user variability for automatic aesthetic assessment.

2025

CBVLM: Training-free Explainable Concept-based Large Vision Language Models for Medical Image Classification

Authors
Patrício, C; Torto, IR; Cardoso, JS; Teixeira, LF; Neves, JC;

Publication
CoRR

Abstract

2024

Parameter-Efficient Generation of Natural Language Explanations for Chest X-ray Classification

Authors
Rio-Torto, I; Cardoso, JS; Teixeira, LF;

Publication
MEDICAL IMAGING WITH DEEP LEARNING

Abstract
The increased interest and importance of explaining neural networks' predictions, especially in the medical community, associated with the known unreliability of saliency maps, the most common explainability method, has sparked research into other types of explanations. Natural Language Explanations (NLEs) emerge as an alternative, with the advantage of being inherently understandable by humans and the standard way that radiologists explain their diagnoses. We extend upon previous work on NLE generation for multi-label chest X-ray diagnosis by replacing the traditional decoder-only NLE generator with an encoder-decoder architecture. This constitutes a first step towards Reinforcement Learning-free adversarial generation of NLEs when no (or few) ground-truth NLEs are available for training, since the generation is done in the continuous encoder latent space, instead of in the discrete decoder output space. However, in the current scenario, large amounts of annotated examples are still required, which are especially costly to obtain in the medical domain, given that they need to be provided by clinicians. Thus, we explore how the recent developments in Parameter-Efficient Fine-Tuning (PEFT) can be leveraged for this usecase. We compare different PEFT methods and find that integrating the visual information into the NLE generator layers instead of only at the input achieves the best results, even outperforming the fully fine-tuned encoder-decoder-based model, while only training 12% of the model parameters. Additionally, we empirically demonstrate the viability of supervising the NLE generation process on the encoder latent space, thus laying the foundation for RL-free adversarial training in low ground-truth NLE availability regimes. The code is publicly available at https://github.com/icrto/peft-nles.

2025

An inpainting approach to manipulate asymmetry in pre-operative breast images

Authors
Montenegro, H; Cardoso, MJ; Cardoso, JS;

Publication
CoRR

Abstract

2025

CountPath: Automating Fragment Counting in Digital Pathology

Authors
Vieira, AB; Valente, M; Montezuma, D; Albuquerque, T; Ribeiro, L; Oliveira, D; Monteiro, JC; Gonçalves, S; Pinto, IM; Cardoso, JS; Oliveira, AL;

Publication
CoRR

Abstract

2025

Enhancing Weakly-Supervised Video Anomaly Detection With Temporal Constraints

Authors
Caetano, F; Carvalho, P; Mastralexi, C; Cardoso, JS;

Publication
IEEE ACCESS

Abstract
Anomaly Detection has been a significant field in Machine Learning since it began gaining traction. In the context of Computer Vision, the increased interest is notorious as it enables the development of video processing models for different tasks without the need for a cumbersome effort with the annotation of possible events, that may be under represented. From the predominant strategies, weakly and semi-supervised, the former has demonstrated potential to achieve a higher score in its analysis, adding to its flexibility. This work shows that using temporal ranking constraints for Multiple Instance Learning can increase the performance of these models, allowing the focus on the most informative instances. Moreover, the results suggest that altering the ranking process to include information about adjacent instances generates best-performing models.

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