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Publications

Publications by LIAAD

2018

Outcome measurement-a scoping review of the literature and future developments in palliative care clinical practice

Authors
Antunes, B; Rodrigues, PP; Higginson, IJ; Ferreira, PL;

Publication
ANNALS OF PALLIATIVE MEDICINE

Abstract
The aim of this scoping review is to give an overview and appraisal of the development of outcome measurement throughout time and its present importance to healthcare and specifically to palliative care clinical practice. It is based on a search and search results of a published systematic review on implementing patient reported outcome measures in palliative care clinical practice. Medline, PsycInfo, Cumulative Index to Nursing and Allied Health Literature, Embase and British Nursing Index were systematically searched from 1985. Hand searching of reference lists for all included articles and relevant review articles was performed. A total of 3,863 articles were screened. Sixty were included in this scoping review. Outcome measurement has a long history in health care and some of the strongest advocates were Florence Nightingale for using patient outcomes besides mortality rates, Codman for the "end result idea" of evaluating the patient status one year after orthopaedic surgery, and Donabedian for taking Codman's work further and developing the structure-process-outcome model. The contribution of patient-centred outcome measurement is vast and paramount in education, audit and as an informative tool for healthcare professionals and decision makers. It is possible to collect these data nationwide which would then allow for cross country comparisons, as well as, economic evaluations in palliative care interventions to contribute to appropriate resource allocation.

2018

Three controversies in health data science

Authors
Peek, N; Rodrigues, PP;

Publication
I. J. Data Science and Analytics

Abstract

2018

Modeling the Dynamics of Multiple Disease Occurrence by Latent States

Authors
Bueno, MLP; Hommersom, A; Lucas, PJF; Lobo, M; Rodrigues, PP;

Publication
SCALABLE UNCERTAINTY MANAGEMENT (SUM 2018)

Abstract
The current availability of large volumes of health care data makes it a promising data source to new views on disease interaction. Most of the times, patients have multiple diseases instead of a single one (also known as multimorbidity), but the small size of most clinical research data makes it hard to impossible to investigate this issue. In this paper, we propose a latent-based approach to expand patient evolution in temporal electronic health records, which can be uninformative due to its very general events. We introduce the notion of clusters of hidden states allowing for an expanded understanding of the multiple dynamics that underlie events in such data. Clusters are defined as part of hidden Markov models learned from such data, where the number of hidden states is not known beforehand. We evaluate the proposed approach based on a large dataset from Dutch practices of patients that had events on comorbidities related to atherosclerosis. The discovered clusters are further correlated to medical-oriented outcomes in order to show the usefulness of the proposed method.

2018

Phenotyping Obstructive Sleep Apnea Patients: A First Approach to Cluster Visualization

Authors
Ferreira Santos, D; Pereira Rodrigues, P;

Publication
DECISION SUPPORT SYSTEMS AND EDUCATION: HELP AND SUPPORT IN HEALTHCARE

Abstract
The varied phenotypes of obstructive sleep apnea (OSA) poses critical challenges, resulting in missed or delayed diagnosis. In this work, we applied k-modes, aiming to identify groups of OSA patients, based on demographic, physical examination, clinical history, and comorbidities characterization variables (n=41) collected from 318 patients. Missing values were imputed with k-nearest neighbours (k-NN) and chi-square test was held. Thirteen variables were inserted in cluster analysis, resulting in three clusters. Cluster 1 were middle-aged men, while Cluster 3 were the oldest men and Cluster 2 mainly middle-aged women. Cluster 3 weighted the most, whereas Cluster 1 weighted the least. The same effect was described in increased neck circumference. The percentages of variables driving sleepiness, congestive heart failure, arrhythmias and pulmonary hypertension were very low (<20%) and OSA severity was more common in mild level. Our results suggest that it is possible to phenotype OSA patients in an objective way, as also, different (although not considered innovative) visualizations improve the recognition of this common sleep pathology.

2018

Causality assessment of adverse drug reaction reports using an expert-defined Bayesian network

Authors
Rodrigues, PP; Ferreira Santos, D; Silva, A; Polonia, J; Ribeiro Vaza, I;

Publication
ARTIFICIAL INTELLIGENCE IN MEDICINE

Abstract
In pharmacovigilance, reported cases are considered suspected adverse drug reactions (ADR). Health authorities have thus adopted structured causality assessment methods, allowing the evaluation of the likelihood that a drug was the causal agent of an adverse reaction. The aim of this work was to develop and validate a new causality assessment support system used in a regional pharmacovigilance centre. A Bayesian network was developed, for which the structure was defined by experts while the parameters were learnt from 593 completely filled ADR reports evaluated by the Portuguese Northern Pharmacovigilance Centre medical expert between 2000 and 2012. Precision, recall and time to causality assessment (TTA) was evaluated, according to the WHO causality assessment guidelines, in a retrospective cohort of 466 reports (April-September 2014) and a prospective cohort of 1041 reports (January-December 2015). Additionally, a simplified assessment matrix was derived from the model, enabling its preliminary direct use by notifiers. Results show that the network was able to easily identify the higher levels of causality (recall above 80%), although struggling to assess reports with a lower level of causality. Nonetheless, the median (Q1:Q3) ITA was 4 (2:8) days using the network and 8 (5:14) days using global introspection, meaning the network allowed a faster time to assessment, which has a procedural deadline of 30 days, improving daily activities in the centre. The matrix expressed similar validity, allowing an immediate feedback to the notifiers, which may result in better future engagement of patients and health professionals in the pharmacovigilance system.

2018

A clinical risk matrix for obstructive sleep apnea using Bayesian network approaches

Authors
Ferreira-Santos, D; Rodrigues, PP;

Publication
International Journal of Data Science and Analytics

Abstract

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