Abstract
Gramene (http://www.gramene.org) is a knowledgebase for comparative functional analysis in major crops and model plant species. The current release, #54, includes over 1.7 million genes from 44 reference genomes, most of which were organized into 62,367 gene families through orthologous and paralogous gene classification, whole-genome alignments, and synteny. Additional gene annotations include ontology-based protein structure and function; genetic, epigenetic, and phenotypic diversity; and pathway associations. Gramene's Plant Reactome provides a knowledgebase of cellular-level plant pathway networks. Specifically, it uses curated rice reference pathways to derive pathway projections for an additional 66 species based on gene orthology, and facilitates display of gene expression, gene-gene interactions, and user-defined omics data in the context of these pathways. As a community portal, Gramene integrates best-of-class software and infrastructure components including the Ensembl genome browser, Reactome pathway browser, and Expression Atlas widgets, and undergoes periodic data and software upgrades. Via powerful, intuitive search interfaces, users can easily query across various portals and interactively analyze search results by clicking on diverse features such as genomic context, highly augmented gene trees, gene expression anatomograms, associated pathways, and external informatics resources. All data in Gramene are accessible through both visual and programmatic interfaces. © Published by Oxford University Press on behalf of Nucleic Acids Research 2017.

Abstract
ABSTRACTTumors subvert immune cell function to evade immune responses, yet the complex mechanisms driving immune evasion remain poorly understood. Here we show that tumors induce de novo steroidogenesis in T lymphocytes to evade anti-tumor immunity. Using a novel transgenic steroidogenesis-reporter mouse line we identify and characterize de novo steroidogenic immune cells. Genetic ablation of T cell steroidogenesis restricts primary tumor growth and metastatic dissemination in mouse models. Steroidogenic T cells dysregulate anti-tumor immunity, and inhibition of the steroidogenesis pathway was sufficient to restore anti-tumor immunity. This study demonstrates T cell de novo steroidogenesis as a mechanism of anti-tumor immunosuppression and a potential druggable target.

Abstract
Objectives: This article seeks to identify neuroanatomical differences in ADHD through an overview of systematic reviews that report encephalic differences compared to a control group in volume, area, activation likelihood or chemical composition.Methods: We conducted a systematic search using Cochrane guidelines and PRISMA criteria in PubMed, Scopus, Web of Science, Cochrane Database of Systematic Reviews and Database of Abstracts of Reviews of Effects.Results: Results revealed broad encephalic involvement that includes a functional frontal and cingulate hypoactivation and structural differences in corpus callosum, cerebellum and basal nuclei.Conclusions: ADHD symptoms might be due to a multi-network unbalanced functioning hypothesis.

Abstract
Numerous diagnostic decisions are made every day by healthcare professionals. Bayesian networks can provide a useful aid to the process, but learning their structure from data generally requires the absence of missing data, a common problem in medical data. We have studied missing data imputation using a step-wise nearest neighbors' algorithm, which we recommended given its limited impact on the assessed validity of structure learning Bayesian network classifiers for Obstructive Sleep Apnea diagnosis. © 2018 European Federation for Medical Informatics (EFMI) and IOS Press.

Abstract
Abiding to the law is, in some cases, a delicate balance between the rights of different players. Re-using health records is such a case. While the law grants reuse rights to public administration documents, in which health records produced in public health institutions are included, it also grants privacy to personal records. To safeguard a correct usage of data, public hospitals in Portugal employ jurists that are responsible for allowing or withholding access rights to health records. To help decision making, these jurists can consult the legal opinions issued by the national committee on public administration documents usage. While these legal opinions are of undeniable value, due to their doctrine contribution, they are only available in a format best suited from printing, forcing individual consultation of each document, with no option, whatsoever of clustered search, filtering or indexing, which are standard operations nowadays in a document management system. When having to decide on tens of data requests a day, it becomes unfeasible to consult the hundreds of legal opinions already available. With the objective to create a modern document management system, we devised an open, platform agnostic system that extracts and compiles the legal opinions, ex-tracts its contents and produces metadata, allowing for a fast searching and filtering of said legal opinions.

Abstract
Obstructive sleep apnea (OSA) is a significant sleep problem with various clinical presentations that have not been formally characterized. This poses critical challenges for its recognition, resulting in missed or delayed diagnosis. Recently, cluster analysis has been used in different clinical domains, particularly within numeric variables. We applied an extension of k-means to be used in categorical variables: k-modes, to identify groups of OSA patients. Demographic, physical examination, clinical history, and comorbidities characterization variables (n=46) were collected from 318 patients; missing values were all imputed with k-nearest neighbors (k-NN). Feature selection, through Chi-square test, was executed and 17 variables were inserted in cluster analysis, resulting in three clusters. Cluster 1 having an age between 65 and 90 years (54%), 78% of males, with the presence of diabetes and gastroesophageal reflux, and high OSA prevalence; Cluster 2 presented a lower percentage of OSA (46%), with middle-aged women without comorbidities, but with gastroesophageal reflux; and Cluster 3 was very similar to cluster 1, only differing in age (45-64) and comorbidities were not present. Our results suggest that there are different groups of OSA patients, creating the need to rethink the baseline characteristics of these patients before being sent to perform polysomnography (gold standard exam for diagnosis). © 2018 IEEE.