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Publicações

Publicações por Joana Magalhães Teixeira

2022

Towards real-time identification of trapped particles with UMAP-based classifiers

Autores
Teixeira, J; Rocha, V; Oliveira, J; Jorge, PAS; Silva, NA;

Publicação
Journal of Physics: Conference Series

Abstract
Optical trapping provides a way to isolate, manipulate, and probe a wide range of microscopic particles. Moreover, as particle dynamics are strongly affected by their shape and composition, optical tweezers can also be used to identify and classify particles, paving the way for multiple applications such as intelligent microfluidic devices for personalized medicine purposes, or integrated sensing for bioengineering. In this work, we explore the possibility of using properties of the forward scattered radiation of the optical trapping beam to analyze properties of the trapped specimen and deploy an autonomous classification algorithm. For this purpose, we process the signal in the Fourier domain and apply a dimensionality reduction technique using UMAP algorithms, before using the reduced number of features to feed standard machine learning algorithms such as K-nearest neighbors or random forests. Using a stratified 5-fold cross-validation procedure, our results show that the implemented classification strategy allows the identification of particle material with accuracies up to 80%, demonstrating the potential of using signal processing techniques to probe properties of optical trapped particles based on the forward scattered light. Furthermore, preliminary results of an autonomous implementation in a standard experimental optical tweezers setup show similar differentiation capabilities for real-time applications, thus opening some opportunities towards technological applications such as intelligent microfluidic devices and solutions for biochemical and biophysical sensing. © Published under licence by IOP Publishing Ltd.

2022

Autonomous Optical Tweezers: From automatic trapping to single particle analysis

Autores
Coutinho, F; Teixeira, J; Rocha, V; Oliveira, J; Jorge, PAS; Silva, NA;

Publicação
Journal of Physics: Conference Series

Abstract
Optical trapping is a versatile and non-invasive technique for single particle manipulation. As such, it can be widely applied in the domains of particle identification and classification and thus used as a tool for monitoring physical and chemical processes. This creates an opportunity for integrating the method seamlessly into optofluidic chips, provided it can be automatized. Yet even though OT is well established in multiple scientific domains, a full stack approach to its integration into other technological devices is still lacking. This calls for solutions in tasks such as automatic trapping and signal analysis. In this manuscript, we describe the implementation of an algorithm seeking autonomous particle location and trapping. The methodology is based upon image-processing, allowing for particle location using real time image segmentation. A local thresholding algorithm is applied, followed by morphological techniques for closing shapes and excluding non-bounded regions - after which only the particles remain on the image. Once the centroid is identified, the stage is translated accordingly by piezo-electric actuators, followed by the laser activation. In this way, trapping is achieved, and one may proceed to analyze the forward scattered optical signal, after which a new particle inside the actuators range may be automatically trapped. This development, when compared with existent solutions involving holographic optical tweezers, allows for similar capabilities without using a spatial light modulator, thus dramatically reducing the setup costs of autonomous OT solutions. Therefore, when combined with particle classification techniques, this method is well suited for integration into possible optofluidic chips for autonomous sensing and monitoring of biochemical samples. © Published under licence by IOP Publishing Ltd.

2025

From waste to resource: LIBS methodology development for rapid quality assessment of recycled wood

Autores
Capela, D; Pessanha, S; Lopes, T; Cavaco, R; Teixeira, J; Ferreira, MFS; Magalhaes, P; Jorge, PAS; Silva, NA; Guimaraes, D;

Publicação
JOURNAL OF HAZARDOUS MATERIALS

Abstract
Management and reuse of wood waste can be a challenging process due to the frequent presence of hazardous contaminants. Conventional detection methods are often limited by the need for excessive sample preparation and lengthy and expensive analysis. Laser-induced Breakdown Spectroscopy (LIBS) is a rapid and micro- destructive technique that can be a promising alternative, providing in-situ and real-time analysis, with minimal to no sample preparation required. In this study, LIBS imaging was used to analyze wood waste samples to determine the presence of contaminants such as As, Ba, Cd, Cr, Cu, Hg, Pb, Sb, and Ti. For this analysis, a methodology based on detecting three lines per element was developed, offering a screening method that can be easily adapted to perform qualitative analysis in industrial contexts with high throughput operations. For the LIBS experimental lines selection, control and reference samples, and a pilot set of 10 wood wastes were analysed. Results were validated by two different X-ray Fluorescence (XRF) systems, an imaging XRF and a handheld XRF, that provided spatial elemental information and spectral information, respectively. The results obtained highlighted LIBS ability to detect highly contaminated samples and the importance of using a 3-line criteria to mitigate spectral interferences and discard outliers. To increase the dataset, a LIBS large-scale study was performed using 100 samples. These results were only corroborated by the XRF-handheld system, as it provides a faster alternative. In particular cases, ICP-MS analysis was also performed. The success rates achieved, mostly above 88 %, confirm the capability of LIBS to perform this analysis, contributing to more sustainable waste management practices and facilitating the quick identifi- cation and remediation of contaminated materials.

2025

Enhancing spectral imaging with multi-condition image fusion

Autores
Teixeira, J; Lopes, T; Capela, D; Monteiro, CS; Guimaraes, D; Lima, A; Jorge, PAS; Silva, NA;

Publicação
SCIENTIFIC REPORTS

Abstract
Spectral Imaging techniques such as Laser-induced Breakdown Spectroscopy (LIBS) and Raman Spectroscopy (RS) enable the localized acquisition of spectral data, providing insights into the presence, quantity, and spatial distribution of chemical elements or molecules within a sample. This significantly expands the accessible information compared to conventional imaging approaches such as machine vision. However, despite its potential, spectral imaging also faces specific challenges depending on the limitations of the spectroscopy technique used, such as signal saturation, matrix interferences, fluorescence, or background emission. To address these challenges, this work explores the potential of using techniques from conventional RGB imaging to enhance the dynamic range of spectral imaging. Drawing inspiration from multi-exposure fusion techniques, we propose an algorithm that calculates a global weight map using exposure and contrast metrics. This map is then used to merge datasets acquired with the same technique under distinct acquisition conditions. With case studies focused on LIBS and Raman Imaging, we demonstrate the potential of our approach to enhance the quality of spectral data, mitigating the impact of the aforementioned limitations. Results show a consistent improvement in overall contrast and peak signal-to-noise ratios of the merged images compared to single-condition images. Additionally, from the application perspective, we also discuss the impact of our approach on sample classification problems. The results indicate that LIBS-based classification of Li-bearing minerals (with Raman serving as the ground truth), is significantly improved when using merged images, reinforcing the advantages of the proposed solution for practical applications.

2024

Automated Optical Tweezers for Enhanced Bioparticle Analysis via Combined Scattering and Raman Spectroscopy

Autores
Teixeira, J; Ribeiro, J; Silva, N; Jorge, P;

Publicação
2024 IEEE SENSORS APPLICATIONS SYMPOSIUM, SAS 2024

Abstract
This paper describes the development of an optical tweezers system that operates in fully automatic mode. It features image recognition for particle tracking, allowing for the optical trapping and analysis of identified targets. The system can perform analysis of forward scattered light and Raman spectroscopy of the trapped particles, facilitating the automated analysis of a large number of samples without manual intervention. By leveraging combined analytical methods and AI for robust classification, this system contributes to the advancement of automated diagnostic tools. Preliminary results demonstrate the system's effectiveness using different kinds of standard and biofunctionalized PMMA microparticles.

2025

Advancing automated mineral identification through LIBS imaging for lithium-bearing mineral species

Autores
Capela, D; Lopes, T; Dias, F; Ferreira, MFS; Teixeira, J; Lima, A; Jorge, PAS; Silva, NA; Guimaraes, D;

Publicação
SPECTROCHIMICA ACTA PART B-ATOMIC SPECTROSCOPY

Abstract
Mineral identification is a challenging task in geological sciences, which often implies multiple analyses of the physical and chemical properties of the samples for an accurate result. This task is particularly critical for the mining industry, where proper and fast mineral identification may translate into major efficiency and performance gains, such as in the case of the lithium mining industry. In this study, a mineral identification algorithm optimized for analyzing lithium-bearing samples using Laser-induced breakdown spectroscopy (LIBS) imaging, is put to the test with a set of representative samples. The algorithm incorporates advanced spectral processing techniques-baseline removal, Gaussian filtering, and data normalization-alongside unsupervised clustering to generate interpretable classification maps and auxiliary charts. These enhancements facilitate rapid and precise labelling of mineral compositions, significantly improving the interpretability and interactivity of the user interface. Extensive testing on diverse mineral samples with varying complexities confirmed the algorithm's robustness and broad applicability. Challenges related to sample granulometry and LIBS resolution were identified, suggesting future directions for optimizing system resolution to enhance classification accuracy in complex mineral matrices. The integration of this advanced algorithm with LIBS technology holds the potential to accelerate the mineral evaluation, paving the way for more efficient and sustainable mineral exploration.

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