2023
Autores
Pedroso, M; Martins, ML; Libânio, D; Dinis-Ribeiro, M; Coimbra, M; Renna, F;
Publicação
2023 IEEE EMBS INTERNATIONAL CONFERENCE ON BIOMEDICAL AND HEALTH INFORMATICS, BHI
Abstract
Gastric Intestinal Metaplasia (GIM) is a precancerous gastric lesion and its early detection facilitates patient followup, thus lowering significantly the risk of death by gastric cancer. However, effective screening of this condition is a very challenging task, resulting low intra and inter-observer concordance. Computer assisted diagnosis systems leveraging deep neural networks (DNNs) have emerged as a way to mitigate these ailments. Notwithstanding, these approaches typically require large datasets in order to learn invariance to the extreme variations typically present in Esophagogastroduodenoscopy (EGD) still frames, such as perspective, illumination, and scale. Hence, we propose to combine a priori information regarding texture characteristics of GIM with data-driven DNN solutions. In particular, we define two different models that treat pre-trained DNNs as general features extractors, whose pairwise interactions with a collection of highly invariant local texture descriptors grounded on fractal geometry are computed by means of an outer product in the embedding space. Our experiments show that these models outperform a baseline DNN by a significant margin over several metrics (e.g., area under the curve (AUC) 0.792 vs. 0.705) in a dataset comprised of EGD narrow-band images. Our best model measures double the positive likelihood ratio when compared to a baseline GIM detector.
2023
Autores
Martins, ML; Coimbra, MT; Renna, F;
Publicação
IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS
Abstract
This work considers the problem of segmenting heart sounds into their fundamental components. We unify statistical and data-driven solutions by introducing Markov-based Neural Networks (MNNs), a hybrid end-toend framework that exploits Markov models as statistical inductive biases for an Artificial Neural Network (ANN) discriminator. We show that an MNN leveraging a simple onedimensional Convolutional ANN significantly outperforms two recent purely data-driven solutions for this task in two publicly available datasets: PhysioNet 2016 (Sensitivity: 0.947 +/- 0.02; Positive Predictive Value : 0.937 +/- 0.025) and the CirCor DigiScope 2022 (Sensitivity: 0.950 +/- 0.008; Positive Predictive Value: 0.943 +/- 0.012). We also propose a novel gradient-based unsupervised learning algorithm that effectively makes the MNN adaptive to unseen datum sampled from unknown distributions. We perform a cross dataset analysis and show that an MNN pre-trained in the CirCor DigiScope 2022 can benefit from an average improvement of 3.90% Positive Predictive Value on unseen observations from the PhysioNet 2016 dataset using this method.
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