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Publicações

Publicações por Tânia Pereira

2023

Special Issue on Novel Applications of Artificial Intelligence in Medicine and Health

Autores
Pereira, T; Cunha, A; Oliveira, HP;

Publicação
APPLIED SCIENCES-BASEL

Abstract
Artificial Intelligence (AI) is one of the big hopes for the future of a positive revolution in the use of medical data to improve clinical routine and personalized medicine [...]

2023

Learning Models for Bone Marrow Edema Detection in Magnetic Resonance Imaging

Autores
Ribeiro, G; Pereira, T; Silva, F; Sousa, J; Carvalho, DC; Dias, SC; Oliveira, HP;

Publicação
APPLIED SCIENCES-BASEL

Abstract
Bone marrow edema (BME) is the term given to the abnormal fluid signal seen within the bone marrow on magnetic resonance imaging (MRI). It usually indicates the presence of underlying pathology and is associated with a myriad of conditions/causes. However, it can be misleading, as in some cases, it may be associated with normal changes in the bone, especially during the growth period of childhood, and objective methods for assessment are lacking. In this work, learning models for BME detection were developed. Transfer learning was used to overcome the size limitations of the dataset, and two different regions of interest (ROI) were defined and compared to evaluate their impact on the performance of the model: bone segmention and intensity mask. The best model was obtained for the high intensity masking technique, which achieved a balanced accuracy of 0.792 +/- 0.034. This study represents a comparison of different models and data regularization techniques for BME detection and showed promising results, even in the most difficult range of ages: children and adolescents. The application of machine learning methods will help to decrease the dependence on the clinicians, providing an initial stratification of the patients based on the probability of edema presence and supporting their decisions on the diagnosis.

2023

Lung CT image synthesis using GANs

Autores
Mendes, J; Pereira, T; Silva, F; Frade, J; Morgado, J; Freitas, C; Negrao, E; de Lima, BF; da Silva, MC; Madureira, AJ; Ramos, I; Costa, JL; Hespanhol, V; Cunha, A; Oliveira, HP;

Publicação
EXPERT SYSTEMS WITH APPLICATIONS

Abstract
Biomedical engineering has been targeted as a potential research candidate for machine learning applications, with the purpose of detecting or diagnosing pathologies. However, acquiring relevant, high-quality, and heterogeneous medical datasets is challenging due to privacy and security issues and the effort required to annotate the data. Generative models have recently gained a growing interest in the computer vision field due to their ability to increase dataset size by generating new high-quality samples from the initial set, which can be used as data augmentation of a training dataset. This study aimed to synthesize artificial lung images from corresponding positional and semantic annotations using two generative adversarial networks and databases of real computed tomography scans: the Pix2Pix approach that generates lung images from the lung segmentation maps; and the conditional generative adversarial network (cCGAN) approach that was implemented with additional semantic labels in the generation process. To evaluate the quality of the generated images, two quantitative measures were used: the domain-specific Frechet Inception Distance and Structural Similarity Index. Additionally, an expert assessment was performed to measure the capability to distinguish between real and generated images. The assessment performed shows the high quality of synthesized images, which was confirmed by the expert evaluation. This work represents an innovative application of GAN approaches for medical application taking into consideration the pathological findings in the CT images and the clinical evaluation to assess the realism of these features in the generated images.

2025

From Pixels to Pathways: AI-Based Approaches for Multimodal Lung Cancer Classification

Autores
Sofia Gonçalves; Joana Vale Sousa; Margarida Gouveia; Maria Amaro; Hélder P. Oliveira; Tania Pereira;

Publicação
2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Abstract

2025

From CT Scans to 3D Printed Models: A Pipeline for Mandible Surgical Planning

Autores
Saraiva, A; Gouveia, M; Lopes, C; Marinho, J; Pereira, T; Mendes, J;

Publicação
2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Abstract

2025

Beyond Accuracy: The Role of Calibration in Computational Pathology

Autores
Nunes, JD; Montezuma, D; Oliveira, D; Pereira, T; Zlobec, I; Cardoso, JS;

Publicação
IJCNN

Abstract
Deep learning in computational pathology (CPath) has rapidly advanced in recent years. Research has primarily focused on enhancing accuracy and interpretability across various histology image analysis tasks, from tile-level to slide-level foundation models and novel multiple instance learning (MIL) strategies. However, it is equally important for models to provide well-calibrated confidence estimates. Due to factors such as dataset bias, overfitting, and limited training data, existing models tend to be overly confident on test sets. Promising solutions to address this issue include temperature scaling, a post-hoc method that adjusts logits using a single scalar value. However, the role of calibration in CPath is yet to be clarified. In this study, we evaluate temperature scaling and linear temperature scaling for CPath tasks, analyzing their impact on recalibration in both in-domain and out-of-domain distributions. The results show the limitations of current probability calibration techniques and motivate future work. © 2025 IEEE.

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