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Publicações

Publicações por Rui Costa Martins

2021

X-ray Fluorescence and Laser-Induced Breakdown Spectroscopy Analysis of Li-Rich Minerals in Veins from Argemela Tin Mine, Central Portugal

Autores
Ribeiro, R; Capela, D; Ferreira, M; Martins, R; Jorge, P; Guimaraes, D; Lima, A;

Publicação
MINERALS

Abstract
In this work, X-ray fluorescence (XRF) and Laser-induced breakdown spectroscopy (LIBS) analyses were applied to samples of quartz, montebrasite, and turquoise hydrothermal veins in the Argemela Tin Mine (Central Portugal). Montebrasite (LiAl(PO4)(OH,F)) is potentially the main ore mineral; with its alteration, lithium (Li) can disseminate into other minerals. A hand sample was cut and analyzed by XRF and LIBS for several elements of interest including Cu, P, Al, Si, and Li. Although XRF cannot measure Li, results from its analysis are effective for distinguishing turquoise from montebrasite. LIBS analysis complemented this study, making it possible to conclude that turquoise does not contain any significant Li in its structure. The difference in spot size between the techniques (5 mm vs. 300 mu m for XRF and LIBS, respectively) resulted in a poorer performance by XRF in accurately identifying mixed minerals. A thin section was petrographically characterized and mapped using LIBS. The mapping results demonstrate the possibility of the successful identification of minerals and their alterations on a thin section. The results of XRF analysis and LIBS mapping in petrographic sections demonstrate the efficacy of these methods as tools for element and mineral identification, which can be important in exploration and mining phases, complementing more traditional techniques.

2021

Visible–Near-Infrared Platelets Count: Towards Thrombocytosis Point-of-Care Diagnosis

Autores
Barroso, TG; Ribeiro, L; Gregório, H; Santos, F; Martins, RC;

Publicação
Chemistry Proceedings

Abstract
Thrombocytosis is a disorder with an excessive number of platelets in the blood, where total platelet counts (TPC) are crucial for diagnosis. This condition predisposes to blood vessels clotting and diseases such as stroke or heart attack. TPC is generally performed at the laboratory by flow cytometry with laser scattering or impedance detection. Due to the limited capacity of automated hematology in performing TPC quantification, a manual microscopy count is a very common quality assurance measure undertaken by clinical pathologists. Monitoring coagulation risk is key in many health conditions, and point-of-care platforms would simplify this procedure by taking platelet counts to the bedside. Spectroscopy has high potential for reagent-less point-of-care miniaturized technologies. However, platelets are difficult to detect in blood by standard spectroscopy analysis, due to their small size, low number when compared to red blood cells, and low spectral contrast to hemoglobin. In this exploratory research, we show that it is possible to perform TPC by advanced spectroscopy analysis, using a new processing methodology based on self-learning artificial intelligence. The results show that TPC can be measured by visible–near-infrared spectroscopy above the standard error limit of 61.19 × 109 cells/L (R2 = 0.7016), tested within the data range of 53 × 109 to 860 × 109 cells/L of dog blood. These results open the possibility for using spectroscopy as a diagnostic technology for the detection of high levels of platelets directly in whole blood, towards the rapid diagnosis of thrombocytosis and stroke prevention.

2021

Feasibility of Total White Blood Cells Counts by Visible-Near Infrared Spectroscopy

Autores
Barroso, TG; Ribeiro, L; Gregório, H; Santos, F; Martins, RC;

Publicação
Chemistry Proceedings

Abstract
Total white blood cells (WBC) count is an important indication for infection diagnosis, in both human and veterinary medicine. State-of-the-art WBC counts are performed by flow cytometry combined with light scattering or impedance measurements, in the clinical analysis laboratory. These technologies are complex and difficult to be miniaturized into a portable point-of-care (POC) system. Spectroscopy is one of the most powerful technologies for POC miniaturization due to its capacity to analyze low sample quantities, little to no sample preparation, and ‘real-time’ results. WBC is in the proportion of 1:1000 to red blood cells (RBC), and the latter dominate visible-near infrared (Vis-NIR) information due to their large quantities and hemoglobin absorbance. WBC are difficult to be detected by traditional spectral analysis because their information is contained within the interference of hemoglobin bands. Herein, we perform a feasibility study for the direct detection of WBC counts in canine blood by Vis-NIR spectroscopy for veterinary applications, benchmarking current chemometrics techniques with self-learning artificial intelligence—a new advanced method for high-accuracy quantification from spectral information. Results show that total WBC counts can be detected by Vis-NIR spectroscopy to an average detection limit of 7.8 ×109 cells/L, with an R2 of 0.9880 between impedance flow cytometry analysis and spectral quantification. This result opens new possibilities for reagent-less POC technology in infection diagnosis. As WBC counts in dogs range from 5 to 45 ×109 cells/L, the detection limit obtained in this research allows concluding that the combined use of spectroscopy with this SL-AI new algorithm is a step towards the existence of portable and miniaturized Spectral POC hemogram analysis.

2022

Unscrambling spectral interference and matrix effects in Vitis vinifera Vis-NIR spectroscopy: Towards analytical grade 'in vivo' sugars and acids quantification

Autores
Martins, RC; Barroso, TG; Jorge, P; Cunha, M; Santos, F;

Publicação
COMPUTERS AND ELECTRONICS IN AGRICULTURE

Abstract
Analytical grade 'in vivo' plant metabolic quantification using spectroscopy is a key enabling technology for precision agriculture.Current methods such as PLS, ANN and LS-SVM are non-optimal for resolving spectral interference and matrix effects to provide similar results to the analytical chemistry laboratory. This research presents a new self-learning artificial intelligence (SL-AI) method based on the search of covariance modes. These isolate the different modes of interference present in spectral data, allowing the consistent quantification of constituents. A review of the state-of-the-art methods with the figures of merit mean absolute standard error percentage (MASEP) and Pearson correlation coefficient (R) is presented for comparison and discussion. 707 grapes were quantified for glucose, fructose, malic and tartaric acids in five wine-making and one table grape varieties, and used to benchmark the new method against the state-of-the-art methodologies: partial least squares, local partial least squares, artificial neural networks and least squares support vector machines. SL-AI provides consistent quantifications, whereas previous methods exhibit data-driven performance dependence. Pearson correlations of 0.93 to 0.99 and MASEP of 3.70% to 7.33% were obtained with the new methodology. Local partial least squares, the method with the best benchmarks from literature, achieved correlations of 0.81 to 0.94 and MASEP of 8.00% to 13.4%. The covariance mode isolates a particular interference, providing a direct relationship between spectral inference and constituent concentrations, consistent with the Beer-Lambert law. Such quantifies non-dominant absorbance constituents (e.g. sugars and acids), which is a significant step towards 'in vivo' plant physiology-based precision agriculture.

2022

Effects of Pulse Duration in Laser-induced Breakdown Spectroscopy

Autores
Ferreira, MFS; Silva, NA; Guimarães, D; Martins, RC; Jorge, PAS;

Publicação
U.Porto Journal of Engineering

Abstract
Laser-induced breakdown spectroscopy (LIBS) is a technique that leverages atomic emission towards element identification and quantification. While the potential of the technology is vast, it still struggles with obstacles such as the variability of the technique. In recent years, several methods have exploited modifications to the standard implementation to work around this problem, mostly focused on the laser side to increase the signal-to-noise ratio of the emission. In this paper, we explore the effect of pulse duration on the detected signal intensity using a tunable LIBS system that consists of a versatile fiber laser, capable of emitting square-shaped pulses with a duration ranging from 10 to 100 ns. Our results show that, by tuning the duration of the pulse, it is possible to increase the signal-to-noise ratio of relevant elemental emission lines, an effect that we relate with the computed plasma temperature and associated density for the ion species. Despite the limitations of the work due to the low-resolution and small range of the spectrometer used, the preliminary results pave an interesting path towards the design of controllable LIBS systems that can be tailored to increase the signal-to-noise ratio and thus be useful for the deployment of more sensitive instruments both for qualitative and quantitative purposes. © 2022, Universidade do Porto - Faculdade de Engenharia. All rights reserved.

2022

Canopy VIS-NIR spectroscopy and self-learning artificial intelligence for a generalised model of predawn leaf water potential in Vitis vinifera

Autores
Tosin, R; Martins, R; Pocas, I; Cunha, M;

Publicação
BIOSYSTEMS ENGINEERING

Abstract
This paper focuses on predicting predawn leaf water potential through a self-learning artificial intelligence (SL-AI) algorithm, a novel spectral processing algorithm that is based on the search for covariance modes, providing a direct relationship between spectral information and plant constituents. The SL-AI algorithm was applied in a dataset containing 847 observations obtained with a handheld hyperspectral spectroradiometer (400 -1010 nm), structured as: three grapevine cultivars (Touriga Nacional, Touriga Franca and Tinta Barroca), collected in three years (2014, 2015 and 2017), in two test sites in the renowned Douro Wine Region, northeast of Portugal. The Psi(pd) SL-AI quantification was tested both in regressive (R-2 = 0.97, MAPE = 18.30%) and classification (three classes; overall accuracy = 86.27%) approaches, where the radiation absorption spectrum zones of the chlorophylls, xanthophyll and water were identified along the vegetative growth cycle. The dataset was also tested with Artificial Neural Networks with Principal Component Analysis (ANN-PCA) and Partial Least Square (PLS), which presented worse performance when compared to SL-AI in the regressive (ANN-PCA - R-2 = 0.85, MAPE = 43.64%; PLS - R-2 = 0.94, MAPE = 28.76%) and classification (ANN-PCA - overall accuracy: 72.37%; PLS - overall accuracy: 73.79%) approaches. The Psi(pd) modelled with SL-AI demonstrated, through hyperspectral reflectance, a cause-effect of the grapevine's hydric status with the absorbance of bands related to chlorophyll, xanthophylls and water. This cause-effect interaction could be explored to identify cultivars and cultural practices, hydric, heating and lighting stresses.

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