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Publicações

Publicações por BIO

2014

RetinaCAD, a System for the Assessment of Retinal Vascular Changes

Autores
Dashtbozorg, B; Mendonca, AM; Penas, S; Campilho, A;

Publicação
2014 36TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY (EMBC)

Abstract
This paper introduces RetinaCAD, a system, for the fast, reliable and automatic measurement of the Central Retinal Arteriolar Equivalent (CRAE), the Central Retinal Venular Equivalent (CRVE), and the Arteriolar-to-Venular Ratio (AVR) values, as well as several geometrical features of the retinal vasculature. RetinaCAD identifies important landmarks in the retina, such as the blood vessels and optic disc, and performs artery/vein classification and vessel width measurement. The estimation of the CRAE, CRVE and AVR values on 480 images from 120 subjects has shown a significant correlation between right and left eyes and also between images of same eye acquired with different camera fields of view. AVR estimation in retinal images of 54 subjects showed the lowest values in people with diabetes or high blood pressure thus demonstrating the potential of the system as a CAD tool for early detection and follow-up of diabetes, hypertension or cardiovascular pathologies.

2014

Heart Sounds Classification using Motif based Segmentation

Autores
Oliveira, SC; Gomes, EF; Jorge, AM;

Publicação
PROCEEDINGS OF THE 18TH INTERNATIONAL DATABASE ENGINEERING AND APPLICATIONS SYMPOSIUM (IDEAS14)

Abstract
In this paper we describe an algorithm for heart sound classification (classes Normal, Murmur and Extrasystole) based on the discretization of sound signals using the SAX (Symbolic Aggregate Approximation) representation. The general strategy is to automatically discover relevant top frequent motifs and relate them with the occurrence of systolic (S1) and diastolic (S2) sounds in the audio signals. The algorithm was tuned using motifs generated from a collection of audio signals obtained from a clinical trial in a hospital. Validation was performed on a separate set of unlabeled audio signals. Results indicate ability to improve the precision of the classification of the classes Normal and Murmur.

2014

Clinical Test for Validation of a New Optical Probe for Hemodynamic Parameters Assessment

Autores
Pereira, T; Santos, I; Oliveira, T; Vaz, P; Almeida, V; Pereira, HC; Correia, C; Cardoso, J; Pereira, TS; Santos, H; Pereira, HC;

Publicação
BIOMEDICAL ENGINEERING SYSTEMS AND TECHNOLOGIES (BIOSTEC 2013)

Abstract
The assessment of the cardiovascular system condition based on multiple parameters allows a more precise and accurate diagnosis of the heart and arterial tree condition. For this reason, the interest in non-invasive devices has presently increased in importance. In this work, an optical probe was tested in order to validate this technology for measuring multiple parameters such as Pulse Wave Velocity (PWV) or Augmentation Index (AIx), amongst others. The PWV measured by the optical probe was previously compared with the values obtained with the gold-standard system. Another analysis was performed in 131 young subjects to establish carotid PWV reference values as well as other hemodynamic parameters and to find correlations between these and the population characteristics. The results allowed us to conclude that this new technique is a reliable method to determine these parameters. The range of the obtained values for local PWV are in agreement with the values obtained by other studies, and significant correlations with age and smoking status were found. The AIx varied between -6.15 % and 11.46 % and exhibit a negative correlation with heart rate, and dP/dt(max) shows a significant decrease with age.

2014

Cell-Free layer (CFL) measurements in complex geometries: Contractions and bifurcations

Autores
Novais, S; Pinho, D; Bento, D; Pinto, E; Yaginuma, T; Fernandes, CS; Garcia, V; Pereira, AI; Lima, J; Mujika, M; Dias, R; Arana, S; Lima, R;

Publicação
Lecture Notes in Computational Vision and Biomechanics

Abstract
In this chapter we discuss the cell-free layer (CFL) developed adjacent to the wall of microgeometries containing complex features representative of the microcirculation, such as contractions, expansions, bifurcations and confluences. The microchannels with the different geometries were made of polydimethylsiloxane (PDMS) and we use optical techniques to evaluate the cell-free layer for red blood cells (RBCs) suspensions with different hematocrit (Hct). The images are captured using a high-speed video microscopy system and the thickness of the cell-free layer was measured using both manual and automatic image analysis techniques. The results show that in in vitro microcirculation, the hematocrit and the geometrical configuration have a major impact on the CFL thickness. In particular, the thickness of the cell-free layer increases as the fluid flows through a contraction–expansion sequence and that this increase is enhanced for lower hematocrit. In contrast, the flow rates tested in these studies did not show a clear influence on the CFL thickness. © Springer Science+Business Media Dordrecht 2014.

2014

LPV system identification using a separable least squares support vector machines approach

Autores
dos Santos, PL; Azevedo Perdicoulis, TP; Ramos, JA; Deshpande, S; Rivera, DE; de Carvalho, JLM;

Publicação
2014 IEEE 53RD ANNUAL CONFERENCE ON DECISION AND CONTROL (CDC)

Abstract
In this article, an algorithm to identify LPV State Space models for both continuous-time and discrete-time systems is proposed. The LPV state space system is in the Companion Reachable Canonical Form. The output vector coefficients are linear combinations of a set of a possibly infinite number of nonlinear basis functions dependent on the scheduling signal, the state matrix is either time invariant or a linear combination of a finite number of basis functions of the scheduling signal and the input vector is time invariant. This model structure, although simple, can describe accurately the behaviour of many nonlinear SISO systems by an adequate choice of the scheduling signal. It also partially solves the problems of structural bias caused by inaccurate selection of the basis functions and high variance of the estimates due to over-parameterisation. The use of an infinite number of basis functions in the output vector increases the flexibility to describe complex functions and makes it possible to learn the underlying dependencies of these coefficients from the data. A Least Squares Support Vector Machine (LS-SVM) approach is used to address the infinite dimension of the output coefficients. Since there is a linear dependence of the output on the output vector coefficients and, on the other hand, the LS-SVM solution is a nonlinear function of the state and input matrix coefficients, the LPV system is identified by minimising a quadratic function of the output function in a reduced parameter space; the minimisation of the error is performed by a separable approach where the parameters of the fixed matrices are calculated using a gradient method. The derivatives required by this algorithm are the output of either an LTI or an LPV (in the case of a time-varying SS matrix) system, that need to be simulated at every iteration. The effectiveness of the algorithm is assessed on several simulated examples.

2014

An Automatic Graph-Based Approach for Artery/Vein Classification in Retinal Images

Autores
Dashtbozorg, B; Mendonca, AM; Campilho, A;

Publicação
IEEE TRANSACTIONS ON IMAGE PROCESSING

Abstract
The classification of retinal vessels into artery/vein (A/V) is an important phase for automating the detection of vascular changes, and for the calculation of characteristic signs associated with several systemic diseases such as diabetes, hypertension, and other cardiovascular conditions. This paper presents an automatic approach for A/V classification based on the analysis of a graph extracted from the retinal vasculature. The proposed method classifies the entire vascular tree deciding on the type of each intersection point (graph nodes) and assigning one of two labels to each vessel segment (graph links). Final classification of a vessel segment as A/V is performed through the combination of the graph-based labeling results with a set of intensity features. The results of this proposed method are compared with manual labeling for three public databases. Accuracy values of 88.3%, 87.4%, and 89.8% are obtained for the images of the INSPIREAVR, DRIVE, and VICAVR databases, respectively. These results demonstrate that our method outperforms recent approaches for A/V classification.

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